Browse Element(s) Details


OsAffx.7834.2.A1_at

Description tigr:9640.m03799
TID=OsAffx.7834.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3900011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed
LOC_Os12g38980OsAffx.20017.1.S1_at11/1112+23937166..23938105hypothetical protein
LOC_Os12g38990OsAffx.32089.1.S1_at11/1112+23947305..23948240BED zinc finger family protein
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein
LOC_Os12g39010Os.14491.2.S1_x_at2/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.47463.1.S1_x_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.27037.1.A1_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39020OsAffx.20018.1.S1_at11/1112+23966732..23967787BED zinc finger family protein
LOC_Os12g39030OsAffx.20019.1.S1_at10/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39030Os.50043.1.A1_at1/1112+23973808..23976462BED zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7834.2.A1_at--32--4911Chr12:23951717..23951741 (25 bp)
GCTTCCAGGCCGTGCGCCGCTTGTG
LOC_Os12g39000
OsAffx.7834.2.A1_at--231--9291Chr12:23951903..23951927 (25 bp)
TCCGTCAGCGCCACGCTAGGTGGGC
LOC_Os12g39000
OsAffx.7834.2.A1_at--995--9231Chr12:23951958..23951982 (25 bp)
TCCTTCAGCCGTCACTCCAAGAGAT
LOC_Os12g39000
OsAffx.7834.2.A1_at--428--3233Chr12:23951975..23951999 (25 bp)
CAAGAGATGAGGAACGAAGCCGATT
LOC_Os12g39000
OsAffx.7834.2.A1_at--729--1673Chr12:23951992..23952016 (25 bp)
AGCCGATTGGATAAGCGCGTCGCCA
LOC_Os12g39000
OsAffx.7834.2.A1_at--1137--10852Chr12:23951998..23952022 (25 bp)
TTGGATAAGCGCGTCGCCATTGCCA
LOC_Os12g39000
OsAffx.7834.2.A1_at--1138--4431Chr12:23952013..23952037 (25 bp)
GCCATTGCCACGTCCGCCAAATTAT
LOC_Os12g39000
OsAffx.7834.2.A1_at--702--7231Chr12:23952024..23952048 (25 bp)
GTCCGCCAAATTATCCAGACGCATG
LOC_Os12g39000
OsAffx.7834.2.A1_at--337--4391Chr12:23952028..23952052 (25 bp)
GCCAAATTATCCAGACGCATGACGT
LOC_Os12g39000
OsAffx.7834.2.A1_at--692--151Chr12:23952033..23952057 (25 bp)
ATTATCCAGACGCATGACGTCCCGT
LOC_Os12g39000
OsAffx.7834.2.A1_at--494--10131Chr12:23952035..23952059 (25 bp)
TATCCAGACGCATGACGTCCCGTCG
LOC_Os12g39000
Target Sequence 
GCTTCCAGGCCGTGCGCCGCTTGTGGGCCATGCGCCGCATCCCTCCGCATCCGCGCTCGCGCCCGGACGCCGCGCACGCG
ATCGACCGCGCCACCTCCGCATCTCGCGTCGCCCCCGTGCACCGCATCGTGCCGCGCCCTAACTCCGTGTCGCGCCAAGT
CCGTCCTTCCGCCGCGAATCCCGGCATCCGTCAGCGCCACGCTAGGTGGGCCCGCGACTCGACCCCGGTCAAGCCGCCAT
CTCCTTCAGCCGTCACTCCAAGAGATGAGGAACGAAGCCGATTGGATAAGCGCGTCGCCATTGCCACGTCCGCCAAATTA
TCCAGACGCATGACGTCCCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7834.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis