Browse Element(s) Details


OsAffx.20019.1.S1_at

Description tigr:9640.m03803
TID=OsAffx.20019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3903010/11BED zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein
LOC_Os12g39010Os.14491.2.S1_x_at2/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.47463.1.S1_x_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.27037.1.A1_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39020OsAffx.20018.1.S1_at11/1112+23966732..23967787BED zinc finger family protein
LOC_Os12g39030OsAffx.20019.1.S1_at10/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39030Os.50043.1.A1_at1/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39040NANA12+23979837..23980325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20019.1.S1_at--100--71Chr12:23973892..23973916 (25 bp)
ATTGCCGAGGATCATCATGTCCCCG
LOC_Os12g39030
OsAffx.20019.1.S1_at--1075--9711Chr12:23974118..23974142 (25 bp)
TAATTAAACGTCCACTGCTGGCTGC
LOC_Os12g39030
OsAffx.20019.1.S1_at--138--991Chr12:23975520..23975544 (25 bp)
AGGAGGAATCAACCAACGACAGCTT
LOC_Os12g39030
OsAffx.20019.1.S1_at--474--6291Chr12:23975564..23975588 (25 bp)
GATGTTGTTGCGTCCTGTGTGAAAC
LOC_Os12g39030
OsAffx.20019.1.S1_at--376--8671Chr12:23975579..23975603 (25 bp)
TGTGTGAAACAAACCGCTGATGCTG
LOC_Os12g39030
OsAffx.20019.1.S1_at--951--6071Chr12:23975617..23975641 (25 bp)
GAGTTTCAGTTACCCAGCAGCTAGT
LOC_Os12g39030
OsAffx.20019.1.S1_at--952--3371Chr12:23975631..23975655 (25 bp)
CAGCAGCTAGTACTCCTATTTCAGT
LOC_Os12g39030
OsAffx.20019.1.S1_at--1040--1171Chr12:23975653..23975677 (25 bp)
AGTACTACAAGTTCTGCGTCCCAGG
LOC_Os12g39030
OsAffx.20019.1.S1_at--665--9711NONE
TCAACTTCACTGCTGTGCTGGTGGG
NONE
OsAffx.20019.1.S1_at--147--9151Chr12:23976310..23976334 (25 bp)
TGCGTCCACTGCTCCAAAGTATATA
LOC_Os12g39030
OsAffx.20019.1.S1_at--936--2011Chr12:23976346..23976370 (25 bp)
ACTAACGGTACATCTCATCTCAGGA
LOC_Os12g39030
Target Sequence 
ATTGCCGAGGATCATCATGTCCCCGACGCCCCTCCTCCTCCTCCTGCTGCTGCAGCAGCTGAAATTCGGCAAAATGTGGC
GAAATTTATAATTAAACGTCCACTGCTGGCTGCTGCATACACAGGCCTGTCAGAGGAGGAATCAACCAACGACAGCTTCA
AGAACCAGGATCTGTTTGATGTTGTTGCGTCCTGTGTGAAACAAACCGCTGATGCTGGTCAGCAGCAGCCGAGTTTCAGT
TACCCAGCAGCTAGTACTCCTATTTCAGTACTACAAGTTCTGCGTCCCAGGGATCCTAACCTCAACTTCACTGCTGTGCT
GGTGGGTGAAGGCTCAAGGAAGCGCAAAGATGAGCCAAATGGATGTGGAGCTCATCATTTGGGAAAGGAAAATATGGAGA
AAGACCAACCCTCCAAAGACATGGCAACATGCGTCCACTGCTCCAAAGTATATACGGCAAAATCGACTAACGGTACATCT
CATCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis