Browse Element(s) Details


OsAffx.20021.1.S1_at

Description tigr:9640.m03806
TID=OsAffx.20021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3906011/11hypothetical protein
LOC_Os07g298601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39030OsAffx.20019.1.S1_at10/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39030Os.50043.1.A1_at1/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39040NANA12+23979837..23980325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20021.1.S1_at--878--10851Chr12:23995686..23995710 (25 bp)
TTGGTTCTTCTGTTTGCCACAGAAG
LOC_Os12g39060
OsAffx.20021.1.S1_at--930--6731Chr12:23995689..23995713 (25 bp)
GTTCTTCTGTTTGCCACAGAAGAGG
LOC_Os12g39060
OsAffx.20021.1.S1_at--797--4611Chr12:23995725..23995749 (25 bp)
GCGAGCGAGGACGAGCGACCAGAGC
LOC_Os12g39060
OsAffx.20021.1.S1_at--122--7712Chr12:23995787..23995811 (25 bp)
GGGTGACAGCGGTAGCGGGCGAGCG
LOC_Os12g39060
OsAffx.20021.1.S1_at--944--1651Chr12:23995808..23995832 (25 bp)
AGCGCGCATCCAGAGCAGTGTGGCA
LOC_Os12g39060
OsAffx.20021.1.S1_at--472--4151Chr12:23995810..23995834 (25 bp)
CGCGCATCCAGAGCAGTGTGGCAGC
LOC_Os12g39060
OsAffx.20021.1.S1_at--230--4991Chr12:23995813..23995837 (25 bp)
GCATCCAGAGCAGTGTGGCAGCAGC
LOC_Os12g39060
OsAffx.20021.1.S1_at--1132--571Chr12:23995815..23995839 (25 bp)
ATCCAGAGCAGTGTGGCAGCAGCGA
LOC_Os12g39060
OsAffx.20021.1.S1_at--68--5011Chr12:23995840..23995864 (25 bp)
GCAGGAGCTGGCGAGTGAGCGCGGG
LOC_Os12g39060
OsAffx.20021.1.S1_at--209--2411Chr12:23995903..23995927 (25 bp)
AAACACCAAAAACTGTCGCGGCTGC
LOC_Os12g39060
OsAffx.20021.1.S1_at--600--3371Chr12:23995906..23995930 (25 bp)
CACCAAAAACTGTCGCGGCTGCCAT
LOC_Os12g39060
Target Sequence 
TTGGTTCTTCTGTTTGCCACAGAAGAGGGGGGAGCGGCAGCGAGCGAGGACGAGCGACCAGAGCAGGCGGGCGAGCGCGT
GGCGACCGGCGGAGTGGAGTGGGGTGACAGCGGTAGCGGGCGAGCGCGCATCCAGAGCAGTGTGGCAGCAGCGAGCAGGA
GCTGGCGAGTGAGCGCGGGGAGGGGGGTCGGCAGGCTCAGCGTCTCCCCCGGTGGTGAAACACCAAAAACTGTCGCGGCT
GCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis