Browse Element(s) Details


Os.55696.1.S1_at

Description gb:AK108584.1
DB_XREF= gi:32993793
TID=Os.55696.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A09, full insert sequence.
FL= gb:AK108584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3910011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein
LOC_Os12g39110Os.14150.1.S1_at11/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.16870.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.19796.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39120Os.22969.1.S1_at11/1112+24032752..24036050protein phosphatase 2C family protein, putative, expressed
LOC_Os12g39130NANA12+24038325..24038936expressed protein
LOC_Os12g39140NANA12+24040447..24041136hypothetical protein
LOC_Os12g39150Os.35344.18.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150Os.35344.3.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.22940.5.S1_x_at3/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.828.1.S1_x_at1/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55696.1.S1_at--972--7271Chr12:24020821..24020845 (25 bp)
GTGCCAGCGTGCAATGGCGTTCGAC
LOC_Os12g39100
Os.55696.1.S1_at--1031--4411Chr12:24020881..24020905 (25 bp)
GCCATGGCTGGTTCAGTGCCAGTAT
LOC_Os12g39100
Os.55696.1.S1_at--73--1131Chr12:24020895..24020919 (25 bp)
AGTGCCAGTATCTCAGCCTCAGGAT
LOC_Os12g39100
Os.55696.1.S1_at--1154--2691Chr12:24020950..24020974 (25 bp)
AAGCTCAAGCTGTCCATGATCACAC
LOC_Os12g39100
Os.55696.1.S1_at--1087--9691Chr12:24020969..24020993 (25 bp)
TCACACTGTGCTACTACTACTCTAG
LOC_Os12g39100
Os.55696.1.S1_at--490--9991Chr12:24021046..24021070 (25 bp)
TAGCCACTAGCTTAATCATTTCCTC
LOC_Os12g39100
Os.55696.1.S1_at--27--211Chr12:24021063..24021087 (25 bp)
ATTTCCTCTCCCACTGTTAATTAAT
LOC_Os12g39100
Os.55696.1.S1_at--544--6731Chr12:24021097..24021121 (25 bp)
GTTCTAGCTAGGTGATCAGTGCAGT
LOC_Os12g39100
Os.55696.1.S1_at--529--10492Chr12:24021136..24021160 (25 bp)
TTAAGTCCTAATCCTGAATTCCTGA
LOC_Os12g39100
Os.55696.1.S1_at--325--3151Chr12:24021152..24021176 (25 bp)
AATTCCTGATCCCAAAGTGTCCATT
LOC_Os12g39100
Os.55696.1.S1_at--178--432Chr12:24021178..24021202 (25 bp)
ATCATCATTTGATCGATCTTGGCTA
LOC_Os12g39100
Target Sequence 
GTGCCAGCGTGCAATGGCGTTCGACCTCGCCATGGGCGACGCCATGAAGCAGCAGCAGTCGCCATGGCTGGTTCAGTGCC
AGTATCTCAGCCTCAGGATGACATGAACAGCAAGAGCAAGCTCAAGCTCAAGCTCAAGCTGTCCATGATCACACTGTGCT
ACTACTACTCTAGCTTAATTATCTTGTGTTTGTAGAAGAAGAAGAGAAGAAGAACAAGAAGAAGCTAGCCACTAGCTTAA
TCATTTCCTCTCCCACTGTTAATTAATCAATTATTTGTTCTAGCTAGGTGATCAGTGCAGTTTGGGCAGGGGGGATTAAG
TCCTAATCCTGAATTCCTGATCCCAAAGTGTCCATTGATCATCATTTGATCGATCTTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis