Browse Element(s) Details


OsAffx.13037.1.S1_x_at

Description tigr:9631.m02542
TID=OsAffx.13037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative amino acid transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2592011/11Amino acid permease family protein
LOC_Os12g390801/11amino acid permease family protein, putative, expressed
LOC_Os03g258691/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25900NANA3+14799965..14800786retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25910OsAffx.3329.1.S1_at11/113+14811018..14811771hypothetical protein
LOC_Os03g25920OsAffx.13037.1.S1_x_at11/113+14815095..14817884Amino acid permease family protein
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13037.1.S1_x_at--638--6611Chr03:14815663..14815687 (25 bp)
GTTGGCTCAAGTACTGGATCGAGGT
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--370--491Chr03:14815619..14815643 (25 bp)
ATCGGCCTCTACTCGGCGACGCTGA
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--585--6694Chr12:24005147..24005170 (24 bp)
GTTCCAGCTCCTCGGCATGGCGGAC
LOC_Os12g39080
OsAffx.13037.1.S1_x_at--539--6691Chr03:14815518..14815542 (25 bp)
GTTCGACACGCCCTGGGTCGGCATC
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--298--771Chr03:14815466..14815490 (25 bp)
ATGTCGTTCACCAGCTTCGACACCA
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--647--9451Chr03:14815289..14815313 (25 bp)
TCGGCGTTCCTCGTCTTCGTCATGG
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--190--9411Chr03:14815273..14815297 (25 bp)
TCGTCATGGCCATCGCCGGGTGGAA
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--842--5311Chr03:14815251..14815275 (25 bp)
GAAGGTGTACGCCATCAGCGCCGTC
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--630--4651Chr03:14815213..14815237 (25 bp)
GCGTCGCGGTGTACTACCTCATGGA
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--20--9911Chr03:14815202..14815226 (25 bp)
TACTACCTCATGGACCTCTGCAAGG
LOC_Os03g25920
OsAffx.13037.1.S1_x_at--614--2951Chr03:14815181..14815205 (25 bp)
AAGGCCAGAGGGTGGCTCACGTTCA
LOC_Os03g25920
Target Sequence 
GTTGGCTCAAGTACTGGATCGAGGTGGGCGCCGTGCTCTCCACCATCGGCCTCTACTCGGCGACGCTGAGCAGCGCCGCG
TTCCAGCTCCTCGGCATGGCGGACCTGGGCCTCCTCCCGCGCGCCTTCGCGCTCCGGGCGCCGGTGTTCGACACGCCCTG
GGTCGGCATCCTCGCCACCGCCGCCATCACCCTCGCCATGTCGTTCACCAGCTTCGACACCATCGTCGCCTCCGCCAACT
TCCTCTACAGCCTCGGCATGCTGCTCGAGTTCGCCGCCTTCGTCCGCCTCCGCGCCAGGCTCCCCGCCATGCCCAGGCCC
TACGCCGTGCCGCTCCGGGGCCTGCCCGCCGCCGCCGCCCTCTGCGCCGTCCCCTCGGCGTTCCTCGTCTTCGTCATGGC
CATCGCCGGGTGGAAGGTGTACGCCATCAGCGCCGTCTTCACCGCCGCCGGCGTCGCGGTGTACTACCTCATGGACCTCT
GCAAGGCCAGAGGGTGGCTCACGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13037.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis