Browse Element(s) Details


OsAffx.13038.1.S1_at

Description tigr:9631.m02546
TID=OsAffx.13038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2595011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25920OsAffx.13037.1.S1_x_at11/113+14815095..14817884Amino acid permease family protein
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os03g25984NANA3+14867844..14868407hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13038.1.S1_at--233--8391Chr03:14843900..14843924 (25 bp)
GGCGACTTCGACTTTGACTGCTGAA
LOC_Os03g25950
OsAffx.13038.1.S1_at--82--5691Chr03:14843897..14843921 (25 bp)
GACTTCGACTTTGACTGCTGAAATG
LOC_Os03g25950
OsAffx.13038.1.S1_at--1047--4091Chr03:14843892..14843916 (25 bp)
CGACTTTGACTGCTGAAATGGCGAT
LOC_Os03g25950
OsAffx.13038.1.S1_at--1094--10251Chr03:14843890..14843912 (23 bp)
TTTGACTGCTGAAATGGCGATGGGC
LOC_Os03g25950
OsAffx.13038.1.S1_at--464--8371Chr03:14842261..14842746 (25 bp)
GGCGATGGGCGGCAGTTGCGTGGCA
LOC_Os03g25950
OsAffx.13038.1.S1_at--1077--1211Chr03:14842248..14842272 (25 bp)
AGTTGCGTGGCAGCCGACGAAGCCA
LOC_Os03g25950
OsAffx.13038.1.S1_at--1059--9132Chr03:14842245..14842269 (25 bp)
TGCGTGGCAGCCGACGAAGCCAACG
LOC_Os03g25950
OsAffx.13038.1.S1_at--1057--5411Chr03:14842230..14842254 (25 bp)
GAAGCCAACGGCTCCTGTGACGAGG
LOC_Os03g25950
OsAffx.13038.1.S1_at--806--3251Chr03:14842225..14842249 (25 bp)
CAACGGCTCCTGTGACGAGGACGAA
LOC_Os03g25950
OsAffx.13038.1.S1_at--540--4271Chr03:14842217..14842241 (25 bp)
CCTGTGACGAGGACGAAGCGATGTC
LOC_Os03g25950
OsAffx.13038.1.S1_at--319--9011Chr03:14842138..14842162 (25 bp)
TGAATTAGTGAAACTGCAGCTTGAC
LOC_Os03g25950
Target Sequence 
GGCGACTTCGACTTTGACTGCTGAAATGGCGATGGGCGGCAGTTGCGTGGCAGCCGACGAAGCCAACGGCTCCTGTGACG
AGGACGAAGCGATGTCGGCGAGGGGTGGTGGTGGCTCGTGCTCGTGGCGAGGTAGAGGCGGTGGAAGTTGTGAATTAGTG
AAACTGCAGCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis