Browse Element(s) Details


Os.27508.1.S2_a_at

Description gb:AK067678.1
DB_XREF= gi:32977696
TID=Os.27508.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116I07, full insert sequence.
FL= gb:AK062206.1 gb:AK069760.1 gb:AK067678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2597011/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os03g25984NANA3+14867844..14868407hypothetical protein
LOC_Os03g25990NANA3+14873554..14874807Alpha-expansin 15 precursor, putative, expressed
LOC_Os03g26000Os.8290.1.S1_at3/113+14878666..14885409expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27508.1.S2_a_at--722--1191Chr03:14851459..14851483 (25 bp)
AGTATCAACCTGTCTGGTAAGCTAT
LOC_Os03g25970
Os.27508.1.S2_a_at--522--4711Chr03:14851408..14851432 (25 bp)
GCTGGAAGTTTTCGCTTTTGCTGAT
LOC_Os03g25970
Os.27508.1.S2_a_at--111--7971Chr03:14851331..14851355 (25 bp)
GGATCTTGACTTGATGTGCACGTGT
LOC_Os03g25970
Os.27508.1.S2_a_at--247--1911Chr03:14851312..14851336 (25 bp)
ACGTGTGCTCTGATGCTCAATCTGA
LOC_Os03g25970
Os.27508.1.S2_a_at--182--10351Chr03:14851189..14851213 (25 bp)
TTTACCCTTCTCATGGAGGTGCAGG
LOC_Os03g25970
Os.27508.1.S2_a_at--938--5911Chr03:14851165..14851189 (25 bp)
GAGCATACGCCGTGTGCTGCTACTG
LOC_Os03g25970
Os.27508.1.S2_a_at--843--1971Chr03:14851144..14851168 (25 bp)
ACTGCAGACTTGTCCACTGCTATAT
LOC_Os03g25970
Os.27508.1.S2_a_at--836--271Chr03:14851123..14851147 (25 bp)
ATATGGAACCACTGCTGGAGTTGCA
LOC_Os03g25970
Os.27508.1.S2_a_at--359--10731Chr03:14851103..14851127 (25 bp)
TTGCAGAACGTTGGTGCCATGCCAT
LOC_Os03g25970
Os.27508.1.S2_a_at--706--2491Chr03:14851012..14851036 (25 bp)
AACAGTATTGTGCTGCTTTCAGTAT
LOC_Os03g25970
Os.27508.1.S2_a_at--80--10471Chr03:14850909..14850933 (25 bp)
TTAGCCGATCATTCTTATGTACTGA
LOC_Os03g25970
Target Sequence 
AGTATCAACCTGTCTGGTAAGCTATATGACTACTATGGCGATTTACAGTTAGCTGGAAGTTTTCGCTTTTGCTGATTTAT
AGATCATAAAAGCCCTAACATGCAATTGTGCAAGCCATGCTATACATGGGATCTTGACTTGATGTGCACGTGTGCTCTGA
TGCTCAATCTGAGTGTGGGTAAGTTTCAGAGAACCTCTCAAAGTTAATAACTGGGTTGAGATTTTATCGAGTTAAGAGTT
TCCTTTGTGTTTTGGAGTCTTTTCCTCTTCTTTACCCTTCTCATGGAGGTGCAGGAGCATACGCCGTGTGCTGCTACTGC
AGACTTGTCCACTGCTATATGGAACCACTGCTGGAGTTGCAGAACGTTGGTGCCATGCCATGCAGGGCATTTGTTAGTGT
ATTGCTGTAGACTATGATACATTTTCGATGTAGGCGGTAACATGGCAAACAGTATTGTGCTGCTTTCAGTATATTTCTTT
TTTTTGGCCAAATTTGTTTATGCATGTAAAAGCAATTCTCTCAACATTGTATTTGAACAGTNNGGNNGAATTAGCCGATC
ATTCTTATGTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27508.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis