Browse Element(s) Details


Os.8290.1.S1_at

Description gb:AK066201.1
DB_XREF= gi:32976219
TID=Os.8290.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052K22, full insert sequence.
FL= gb:AK066201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g260003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os03g25984NANA3+14867844..14868407hypothetical protein
LOC_Os03g25990NANA3+14873554..14874807Alpha-expansin 15 precursor, putative, expressed
LOC_Os03g26000Os.8290.1.S1_at3/113+14878666..14885409expressed protein
LOC_Os03g26010NANA3+14886347..14887722retrotransposon protein, putative, unclassified, expressed
LOC_Os03g26020NANA3+14888191..14891800retrotransposon protein, putative, unclassified
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8290.1.S1_at--824--331Chr03:14885179..14885203 (25 bp)
ATACAGAGCTGTTGAATCACATGCA
LOC_Os03g26000
Os.8290.1.S1_at--334--5671Chr03:14885317..14885341 (25 bp)
GACATTTTGGATCTGGCGAAACCTA
LOC_Os03g26000
Os.8290.1.S1_at--1144--4711Chr03:14885361..14885385 (25 bp)
GCTGGTGGTTCTTTCACGACTGAAG
LOC_Os03g26000
Os.8290.1.S1_at--1098--6911Chr03:14885391..14885415 (25 bp)
GTATGACTGCTTTCCATAGCCATTA
NONE
Os.8290.1.S1_at--857--10351Chr03:14885456..14885480 (25 bp)
TTTTTCCTCGGGTGATGATTGGTGA
NONE
Os.8290.1.S1_at--185--2531Chr03:14885480..14885504 (25 bp)
AACTTACTGTGGTTCATTTTGAGAC
NONE
Os.8290.1.S1_at--142--6331Chr03:14885505..14885529 (25 bp)
GATGAATGCGCAAATCCTGCCTAGG
NONE
Os.8290.1.S1_at--405--9271Chr03:14885519..14885543 (25 bp)
TCCTGCCTAGGCATTCAGTCTGATG
NONE
Os.8290.1.S1_at--156--4291Chr03:14885546..14885570 (25 bp)
CCTGCTGGTAGGATTTCCATGAAGA
NONE
Os.8290.1.S1_at--1065--10031Chr03:14885591..14885615 (25 bp)
TAGAGAAATGGCCTTGTGCCGCTCC
NONE
Os.8290.1.S1_at--1147--9151Chr03:14885607..14885631 (25 bp)
TGCCGCTCCTAATGTCTAGTACTTA
NONE
Target Sequence 
ATACAGAGCTGTTGAATCACATGCAGAAGAAACAGGCGAGTGGTCAAGATTAAGAGNAGACATTTTGGATCTGGCGAAAC
CTAAGATGAGTATGACAGACAAGCTGGTGGTTCTTTCACGACTGAAGGGAACGTATGACTGCTTTCCATAGCCATTAGGG
GGTGTTTGATGCATCTGAAATTTTTCATCATCCTTTTTTTTTCCTCGGGTGATGATTGGTGAACTTACTGTGGTTCATTT
TGAGACGATGAATGCGCAAATCCTGCCTAGGCATTCAGTCTGATGCNCCTGCTGGTAGGATTTCCATGAAGATTTTGATN
CCGAAAATACGATAGAGAAATGGCCTTGTGCCGCTCCTAATGTCTAGTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis