Browse Element(s) Details


OsAffx.25229.1.S1_x_at

Description tigr:9631.m02555
TID=OsAffx.25229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2603010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25990NANA3+14873554..14874807Alpha-expansin 15 precursor, putative, expressed
LOC_Os03g26000Os.8290.1.S1_at3/113+14878666..14885409expressed protein
LOC_Os03g26010NANA3+14886347..14887722retrotransposon protein, putative, unclassified, expressed
LOC_Os03g26020NANA3+14888191..14891800retrotransposon protein, putative, unclassified
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25229.1.S1_x_at--1010--3751Chr03:14901138..14901162 (25 bp)
CTCTTTGCAGTTCGAGCATGGGCTA
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--937--1531NONE
AGCATGGGCTACACATGGCCGTGGT
NONE
OsAffx.25229.1.S1_x_at--159--10491Chr03:14902449..14902473 (25 bp)
TTAACACTGTACACCCTTGATAGAC
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--632--2751Chr03:14902662..14902686 (25 bp)
AAGACAAGCTGGTTCTGCTGTCCCG
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--58--9131Chr03:14902677..14902701 (25 bp)
TGCTGTCCCGGCTCAAAGGGATGTA
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--596--1071Chr03:14902693..14902717 (25 bp)
AGGGATGTACGACTGCTTACTTCCA
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--112--7191Chr03:14902740..14902764 (25 bp)
GTCTGTAGTCTTCTCATCTTCCTTT
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--649--9551Chr03:14902778..14902802 (25 bp)
TCTTTTCTTTTTGGTCACGTGTGAC
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--1076--9031Chr03:14902837..14902861 (25 bp)
TGCTTGGCGTTTTAAGAGTCGTCAA
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--126--611Chr03:14902876..14902900 (25 bp)
ATGCCCCGGGTACTTTGATTGTAGC
LOC_Os03g26030
OsAffx.25229.1.S1_x_at--163--1671Chr03:14902898..14902922 (25 bp)
AGCCCTTTCGGCTCCATGGAGTGAT
LOC_Os03g26030
Target Sequence 
CTCTTTGCAGTTCGAGCATGGGCTACACATGGCCGTGGTGCTGAGGGAAGAGGTAGGACTGCACGGCGTCAGCGAAGGCT
GCTTCTTGCTGATGTAGAGAAAAGGCTTATGGAGTTTCAGAATTGCATGGCTAATGGAATGGAGGAAGAGGCATGCTGTA
AGTTCGGGTTAACACTGTACACCCTTGATAGACTATACAAAGCTGTTGAATCGCAGGCGAGAGAAACAGGAGAGTGGTCA
AGCTTGAGAGAAGACATGTTTGATCTGGCAAAGCCTGGTGTGGGCATGGAAGACAAGCTGGTTCTGCTGTCCCGGCTCAA
AGGGATGTACGACTGCTTACTTCCATCACCGTCAGGTGTCTTGCCCCGTCTGTAGTCTTCTCATCTTCCTTTCCTTTCCT
TTTCTTCTTTTCTTTTTGGTCACGTGTGACGATTAGTGAACCCCAATCTTAGACGACATGAATTTGCTTGGCGTTTTAAG
AGTCGTCAAATTTTGAATTTTTTATGCCCCGGGTACTTTGATTGTAGCCCTTTCGGCTCCATGGAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25229.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis