Browse Element(s) Details


OsAffx.13040.1.S1_at

Description tigr:9631.m02558
TID=OsAffx.13040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2606010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26010NANA3+14886347..14887722retrotransposon protein, putative, unclassified, expressed
LOC_Os03g26020NANA3+14888191..14891800retrotransposon protein, putative, unclassified
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13040.1.S1_at--884--6011Chr03:14912679..14912703 (25 bp)
GAGAGGTCACCGGTGGATCCGCTTC
LOC_Os03g26060
OsAffx.13040.1.S1_at--643--7731Chr03:14912690..14912714 (25 bp)
GGTGGATCCGCTTCTCCTGTTGCTA
LOC_Os03g26060
OsAffx.13040.1.S1_at--620--8811Chr03:14912707..14912731 (25 bp)
TGTTGCTACCGACGGATCCACATAC
LOC_Os03g26060
OsAffx.13040.1.S1_at--230--5751Chr03:14912717..14912741 (25 bp)
GACGGATCCACATACCTCGAGTCTA
LOC_Os03g26060
OsAffx.13040.1.S1_at--641--6091Chr03:14912735..14912759 (25 bp)
GAGTCTACCGTCATTGTCGTGGTCC
LOC_Os03g26060
OsAffx.13040.1.S1_at--1158--7471Chr03:14912753..14912777 (25 bp)
GTGGTCCCACTTAGCCGATGTTTCG
LOC_Os03g26060
OsAffx.13040.1.S1_at--1053--4231NONE
CCGTCGTCGTGGGATAATGCTTACC
NONE
OsAffx.13040.1.S1_at--445--7671Chr03:14914095..14914119 (25 bp)
GGGATAATGCTTACCAGGCTGTGCA
LOC_Os03g26060
OsAffx.13040.1.S1_at--442--1731Chr03:14914107..14914131 (25 bp)
ACCAGGCTGTGCAAAGGCAGACGAT
LOC_Os03g26060
OsAffx.13040.1.S1_at--899--1392Chr03:14914125..14914149 (25 bp)
AGACGATGGTGCAGGTCCAATGGAA
LOC_Os03g26060
OsAffx.13040.1.S1_at--1007--1651Chr03:14914179..14914203 (25 bp)
AGCGCGGTTGCCAGCCTAGGAAAAG
LOC_Os03g26060
Target Sequence 
GAGAGGTCACCGGTGGATCCGCTTCTCCTGTTGCTACCGACGGATCCACATACCTCGAGTCTACCGTCATTGTCGTGGTC
CCACTTAGCCGATGTTTCGCCCCTCCCCACCGTCGTCGTGGGATAATGCTTACCAGGCTGTGCAAAGGCAGACGATGGTG
CAGGTCCAATGGAAGGCATGAGCGTGGGTCAGTCGGCGGCAGGAGCGCGGTTGCCAGCCTAGGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis