Browse Element(s) Details


OsAffx.13041.1.S1_at

Description tigr:9629.m05432
TID=OsAffx.13041.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Asparaginase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5142010/11transposon protein, putative, unclassified
LOC_Os03g261009/11transposon protein, putative, unclassified
LOC_Os03g511207/11transposon protein, putative, unclassified
LOC_Os01g556203/11transposon protein, putative, unclassified
LOC_Os02g331601/11transposon protein, putative, unclassified
LOC_Os04g461501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13041.1.S1_at--444--4974Chr12:25833402..25833547 (25 bp)
GCATCTTGACGGTGGGTTGCGCAGT
NONE
OsAffx.13041.1.S1_at--728--7673Chr03:14933975..14933999 (25 bp)
GGGTTGCGCAGTGGTGCACTCAAAC
LOC_Os03g26100
OsAffx.13041.1.S1_at--658--7894Chr04:27120912..27120935 (24 bp)
GGTTGCGCAGTGGTGCACTCAAACG
NONE
OsAffx.13041.1.S1_at--158--6694Chr04:27120912..27120936 (25 bp)
GTTGCGCAGTGGTGCACTCAAACGG
NONE
OsAffx.13041.1.S1_at--120--10714Chr04:27120913..27120937 (25 bp)
TTGCGCAGTGGTGCACTCAAACGGC
NONE
OsAffx.13041.1.S1_at--393--4574Chr04:27120915..27120939 (25 bp)
GCGCAGTGGTGCACTCAAACGGCCA
NONE
OsAffx.13041.1.S1_at--595--5014Chr04:27120917..27120941 (25 bp)
GCAGTGGTGCACTCAAACGGCCACA
NONE
OsAffx.13041.1.S1_at--876--1094Chr04:27120919..27120943 (25 bp)
AGTGGTGCACTCAAACGGCCACACC
NONE
OsAffx.13041.1.S1_at--860--7494Chr04:27120920..27120944 (25 bp)
GTGGTGCACTCAAACGGCCACACCG
NONE
OsAffx.13041.1.S1_at--688--237Chr04:27121324..27121345 (22 bp)
ATATTTTGTGTGTAAATGACAGACA
LOC_Os04g46150
OsAffx.13041.1.S1_at--237--7471Chr01:32376840..32376864 (25 bp)
GTGTGTAAATGACAGACAGGTCCCA
LOC_Os01g55620
Target Sequence 
GCATCTTGACGGTGGGTTGCGCAGTGGTGCACTCAAACGGCCACACCGCGGCGGCCATGTCCACGGGCGGGCTGATGAAC
AAGATGACCGGGCGCATCGGCGACTCGCCGTTGATCGGGTCGGGGGAAGGCAAGGCCATCATACGCTCCACGCTGGCGCG
CGACGTCGCCGCCGTGATGGAGTACAGGGGCGCCGGGCTGCAGGAGGCCATCGACTACTGCGTCAAGGAACGGCTGGACG
AAGGGTTCATCGGGCTCATCGCGGTGTCCNGCACCGGCGAGGTGGCGCACGGGTTCAACTGCACCGGCATGTTCAGCGGG
TGCGGCTGCAGGAGAAAAGAGAGAGAAGGGAGAGAGAGGGGGNAGGAAGAAGGGTTGGAGAGAGAAAGGATGACATGTGG
GTCNCACAATATATTTTGTGTGTAAATGACAGACAGGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis