Browse Element(s) Details


Os.51756.1.A1_at

Description gb:AK063616.1
DB_XREF= gi:32973634
TID=Os.51756.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D11, full insert sequence.
FL= gb:AK063616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5143011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os04g51460Os.11354.1.S1_at11/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51460OsAffx.9796.1.S1_x_at1/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51756.1.A1_at--608--10811Chr04:30243681..30243705 (25 bp)
TTGTACCACTTCCTAATCTTCCATT
LOC_Os04g51430
Os.51756.1.A1_at--652--2751Chr04:30243728..30243752 (25 bp)
AAGACTGAACCTGTCGCTGTACTAG
LOC_Os04g51430
Os.51756.1.A1_at--955--7091Chr04:30243785..30243809 (25 bp)
GTCACTCAATGGCTTGTTCACTGGG
LOC_Os04g51430
Os.51756.1.A1_at--8--10171Chr04:30243816..30243840 (25 bp)
TATCTCCTGAGGATGCTACTTGGGA
LOC_Os04g51430
Os.51756.1.A1_at--906--8631Chr04:30243836..30243860 (25 bp)
TGGGAGGACTCTGCTTTTATTCAAG
LOC_Os04g51430
Os.51756.1.A1_at--103--10351Chr04:30243851..30243875 (25 bp)
TTTATTCAAGCAACGTTTCCACATT
LOC_Os04g51430
Os.51756.1.A1_at--445--6851Chr04:30243865..30243889 (25 bp)
GTTTCCACATTTTCGACCTTGAGGA
LOC_Os04g51430
Os.51756.1.A1_at--301--6292Chr04:30244044..30244068 (25 bp)
GATGAGGCTATTCCAAATTACCATG
LOC_Os04g51430
Os.51756.1.A1_at--730--812Chr04:30244066..30244090 (25 bp)
ATGGTGCATTTACGGCTGTGATCGC
LOC_Os04g51430
Os.51756.1.A1_at--410--4731Chr04:30244080..30244104 (25 bp)
GCTGTGATCGCTTTGTTGTACTATT
LOC_Os04g51430
Os.51756.1.A1_at--724--10812Chr04:30244095..30244119 (25 bp)
TTGTACTATTTACCGTTTCTGTTTG
LOC_Os04g51430
Target Sequence 
TTGTACCACTTCCTAATCTTCCATTGGTGGATGAAGATGGTAACATCAAGACTGAACCTGTCGCTGTACTAGCAAGAAGG
GTAGTTCCAAGAAGAAATGAGCCGGTCACTCAATGGCTTGTTCACTGGGAAAATCTATCTCCTGAGGATGCTACTTGGGA
GGACTCTGCTTTTATTCAAGCAACGTTTCCACATTTTCGACCTTGAGGACAAGGTCGTGCTCAAGGGGATTGGATTGTTA
GAGATGGAGATTTCAGAGAAGAAATGGAGAAGAGTTTCAGAAGTTTCAGTTAAAAATTCAGAAGTTCAGAGTTAGAGTGG
GATACCGGTTGGGTGACGTCGTTTAATGAAGATGAACGGTAGAGATGAGGCTATTCCAAATTACCATGGTGCATTTACGG
CTGTGATCGCTTTGTTGTACTATTTACCGTTTCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51756.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis