Browse Element(s) Details


Os.34698.1.S1_x_at

Description gb:AK070482.1
DB_XREF= gi:32980506
TID=Os.34698.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050C09, full insert sequence.
FL= gb:AK070482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5139010/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34698.1.S1_x_at--897--7411Chr04:30218246..30218270 (25 bp)
GTGTTGAACCTGCAGCCGTTGAGAA
LOC_Os04g51390
Os.34698.1.S1_x_at--13--5971Chr04:30218266..30218290 (25 bp)
GAGAAGCCCATTACCTTGAAGCCTG
LOC_Os04g51390
Os.34698.1.S1_x_at--610--5531Chr04:30218306..30218330 (25 bp)
GAAAAATGGATCTCTCCGCAGTTCC
LOC_Os04g51390
Os.34698.1.S1_x_at--522--6971Chr04:30218342..30218366 (25 bp)
GTAGCGGGCAGTTAGATCCAAATAA
LOC_Os04g51390
Os.34698.1.S1_x_at--871--2051Chr04:30218922..30218946 (25 bp)
ACTTCATTATCTTACCATTTCCACA
LOC_Os04g51390
Os.34698.1.S1_x_at--686--411Chr04:30219010..30219034 (25 bp)
ATCTTGGGAAAATCTGCCGTCAGTG
LOC_Os04g51390
Os.34698.1.S1_x_at--414--10351Chr04:30219072..30219096 (25 bp)
TTTTCTTACCGATCAGTAGCACCAC
LOC_Os04g51390
Os.34698.1.S1_x_at--919--2311Chr04:30219098..30219122 (25 bp)
AAAGTATTGTTTTCCGGGTCATGTG
LOC_Os04g51390
Os.34698.1.S1_x_at--973--9051Chr04:30219144..30219168 (25 bp)
TGCATCTCGGATGTATCTGGCTAAT
LOC_Os04g51390
Os.34698.1.S1_x_at--229--10191Chr04:30219171..30219195 (25 bp)
TATTTGCAAACTGTTCCCTGTACCT
LOC_Os04g51390
Os.34698.1.S1_x_at--1145--6531Chr04:30219237..30219261 (25 bp)
GATTTTATTGTTCCTCTATTAACCA
NONE
Target Sequence 
GTGTTGAACCTGCAGCCGTTGAGAAGCCCATTACCTTGAAGCCTGGCGAAGAGTGGAAAGGAAAAATGGATCTCTCCGCA
GTTCCTTCCAGTTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTCAAGGCTGAGAGTTCTAATTTACTACACCATG
TACAGGNANNNNNNNNNNNANNTANNTNNTCNNNNNNNNNNNNNNNNTNTNAGCATCTACTTGCCGTCCACTTCATTATC
TTACCATTTCCACATTTTAATGCTTATTTCTTTCTGTATGAAGCAGCAGAGAGACACTGAAGTAACAAACGATCCTAATC
TTGGGAAAATCTGCCGTCAGTGAACTGAATTACCGATTAGTAGCACCACTAAAGTATTGTTTTCTTACCGATCAGTAGCA
CCACTAAAGTATTGTTTTCCGGGTCATGTGGATAATGATGATGCATTGATCTGCATCTCGGATGTATCTGGCTAATTATA
TTTGCAAACTGTTCCCTGTACCTTTCCTTTGTTATTATCATTATTACTGCGAGTATATCTGGTTGATTTTATTGTTCCTC
TATTAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34698.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis