Browse Element(s) Details


Os.8064.1.S1_at

Description gb:AK058634.1
DB_XREF= gi:32968652
TID=Os.8064.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D02, full insert sequence.
FL= gb:AK073958.1 gb:AK058634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5134011/11Pectinacetylesterase protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8064.1.S1_at--763--1251Chr04:30189579..30189603 (25 bp)
AGATTTTCTGGCAGCTCTTCCTAAA
LOC_Os04g51340
Os.8064.1.S1_at--497--7251Chr04:30189612..30189636 (25 bp)
GTCCCCAGCCAATTTGAGCATATTC
LOC_Os04g51340
Os.8064.1.S1_at--334--991Chr04:30189674..30189698 (25 bp)
AGGATACATGGCTCGCTCAAGGTTC
LOC_Os04g51340
Os.8064.1.S1_at--1162--10071Chr04:30189875..30189899 (25 bp)
TAGGAGACTGGTTCCACGATCGGGA
LOC_Os04g51340
Os.8064.1.S1_at--253--10151Chr04:30189902..30189926 (25 bp)
TATCCCGGAGGATTGATTGCCCTTA
LOC_Os04g51340
Os.8064.1.S1_at--349--2611Chr04:30189934..30189958 (25 bp)
AACCCAACCTGCAAGAACCGTGATG
LOC_Os04g51340
Os.8064.1.S1_at--127--10211Chr04:30190068..30190092 (25 bp)
TTACTGTTACCCACGATTTCTTCAA
LOC_Os04g51340
Os.8064.1.S1_at--641--3151Chr04:30190091..30190115 (25 bp)
AATTCTTCTCCATTCTGTTTCTATG
LOC_Os04g51340
Os.8064.1.S1_at--717--6831Chr04:30190107..30190131 (25 bp)
GTTTCTATGCCTTTGTCGACGATGA
LOC_Os04g51340
Os.8064.1.S1_at--1073--6511Chr04:30190220..30190244 (25 bp)
GATTTGCCTGTAAAACGTGTTGCCG
LOC_Os04g51340
Os.8064.1.S1_at--631--4491Chr04:30190241..30190265 (25 bp)
GCCGTTGGCACACCTAGCAGAAATT
LOC_Os04g51340
Target Sequence 
AGATTTTCTGGCAGCTCTTCCTAAACCAGAGCAGTCCCCAGCCAATTTGAGCATATTCATAGACTCATGCTATGCCCACT
GCCAATCTGGGTCCCAGGATACATGGCTCGCTCAAGGTTCTCCTGTAGTTGAGAAGACGCAAATTGGTAAAGCAGTAGGA
GACTGGTTCCACGATCGGGAAGTATCCCGGAGGATTGATTGCCCTTATCCCTGCAACCCAACCTGCAAGAACCGTGATGA
TGATTAAGCAATTCGACCTGAAAACTTCTGTTAAATTCTAGTACTGTGTTGTTAAATATCAAGTGAAGCAATAAGGGATT
AGTCTATAGATAGAGCCATAGAGAGGTGTTACTGTTACCCACGATTTCTTCAATTCTTCTCCATTCTGTTTCTATGCCTT
TGTCGACGATGAATCATGAACATATAGTTCAGTAAGCTCAAAATTTCTCTGTTCATCTCTAATGAGAACCCAACAAAGGA
ACAGATGCAGTAACCTTGCAGATTTGCCTGTAAAACGTGTTGCCGTTGGCACACCTAGCAGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis