Browse Element(s) Details


OsAffx.14365.1.S1_at

Description tigr:9632.m04963
TID=OsAffx.14365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=possible apospory-associated protein c
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5139011/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14365.1.S1_at--995--9411Chr04:30218649..30218673 (25 bp)
TCGTGCTTAAGAGTCATGTACCATC
LOC_Os04g51390
OsAffx.14365.1.S1_at--256--7131Chr04:30218661..30218685 (25 bp)
GTCATGTACCATCATTTATGCTATG
LOC_Os04g51390
OsAffx.14365.1.S1_at--1135--6791Chr04:30218685..30218709 (25 bp)
GTTTTCATTACATGTCCAACCAGGT
LOC_Os04g51390
OsAffx.14365.1.S1_at--249--271Chr04:30218703..30218727 (25 bp)
ACCAGGTTTTGGAGAAATCAGTACA
LOC_Os04g51390
OsAffx.14365.1.S1_at--429--211Chr04:30218773..30218797 (25 bp)
ATTTGCTCTCATCTTATACTCCATA
LOC_Os04g51390
OsAffx.14365.1.S1_at--1125--311Chr04:30218788..30218812 (25 bp)
ATACTCCATATTTGGTACACATTTT
LOC_Os04g51390
OsAffx.14365.1.S1_at--704--10591Chr04:30218822..30218846 (25 bp)
TTCTGCTTTGTTTCTAATCTGTGAC
LOC_Os04g51390
OsAffx.14365.1.S1_at--692--3051Chr04:30218837..30218861 (25 bp)
AATCTGTGACTTGTTCTGCAGGAAC
LOC_Os04g51390
OsAffx.14365.1.S1_at--836--3831Chr04:30218852..30218876 (25 bp)
CTGCAGGAACACTTAATGTCACTTA
LOC_Os04g51390
OsAffx.14365.1.S1_at--339--10211Chr04:30218877..30218901 (25 bp)
TATTATCTGGTGCTGATGCTGCATC
LOC_Os04g51390
OsAffx.14365.1.S1_at--312--4771Chr04:30218894..30218918 (25 bp)
GCTGCATCTTAGCATCTACTTGCCG
LOC_Os04g51390
Target Sequence 
TCGTGCTTAAGAGTCATGTACCATCATTTATGCTATGTTTTCATTACATGTCCAACCAGGTTTTGGAGAAATCAGTACAA
CCAAGAAATATATCGAGTTATTAATTCCATAATAAGTATATAGTATTTGCTCTCATCTTATACTCCATATTTGGTACACA
TTTTTTTGGTAGCTTCTGCTTTGTTTCTAATCTGTGACTTGTTCTGCAGGAACACTTAATGTCACTTATATTATCTGGTG
CTGATGCTGCATCTTAGCATCTACTTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis