Browse Element(s) Details


Os.37811.1.S1_at

Description gb:AK107076.1
DB_XREF= gi:32992285
TID=Os.37811.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F04, full insert sequence.
FL= gb:AK107076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5141011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37811.1.S1_at--523--6711Chr04:30228358..30228382 (25 bp)
GTTCGAGATTCTGAAATCCGAGCTG
LOC_Os04g51410
Os.37811.1.S1_at--1091--5871Chr04:30228339..30228363 (25 bp)
GAGCTGGAGGAATCACGCGCCCCGA
LOC_Os04g51410
Os.37811.1.S1_at--811--271Chr04:30228238..30228262 (25 bp)
ATAGAGACGTCGACGGCCATGACAC
LOC_Os04g51410
Os.37811.1.S1_at--1020--3511Chr04:30228221..30228245 (25 bp)
CATGACACGGACACGCGGATTGGCA
LOC_Os04g51410
Os.37811.1.S1_at--112--7931Chr04:30228205..30228229 (25 bp)
GGATTGGCAGACACCGGCTAATAAT
LOC_Os04g51410
Os.37811.1.S1_at--497--5491Chr04:30228170..30228194 (25 bp)
GAACACCAACTTTAGTACTACGTGA
LOC_Os04g51410
Os.37811.1.S1_at--1109--731Chr04:30228123..30228147 (25 bp)
ATGTCTAATCGCAGTTGTCAGGCAT
LOC_Os04g51410
Os.37811.1.S1_at--523--3971Chr04:30228050..30228074 (25 bp)
CGGTAGCATCAGGTCATAAGCATCT
LOC_Os04g51410
Os.37811.1.S1_at--888--9871Chr04:30227995..30228019 (25 bp)
TACATGGCGGTTGCGCTGAATTCTC
LOC_Os04g51410
Os.37811.1.S1_at--677--4751Chr04:30227981..30228005 (25 bp)
GCTGAATTCTCGCAAACTCTGGAGG
LOC_Os04g51410
Os.37811.1.S1_at--398--7411Chr04:30227924..30227948 (25 bp)
GTGTATTTTCTATCCTGTTTACCTA
LOC_Os04g51410
Target Sequence 
GTTCGAGATTCTGAAATCCGAGCTGGAGGAATCACGCGCCCCGACGAAGCAGCGAAAGCCGCCGGCGTGGAGNCCGCNGT
CGGCGTGGTCCAGCCGGTCGTCGTCGATCGCGGCCGNGCAATAGAGACGTCGACGGCCATGACACGGACACGCGGATTGG
CAGACACCGGCTAATAATAAGAAGTTAAGAACACCAACTTTAGTACTACGTGATAGCTATTAGTTTCGTACTTAAATGTC
TAATCGCAGTTGTCAGGCATCATCATCCATCCCCCTGCCCGTCTATCCGGCAAAAGAGCGAAAATTTTCGGTAGCATCAG
GTCATAAGCATCTGAAAGTCTGAAAAAGAAAAACTGTACATANCTACATGGCGGTTGCGCTGAATTCTCGCAAACTCTGG
AGGAAAAGATGGAGTAAGAGGGGNTTTATTTTTCAAGTGTATTTTCTATCCTGTTTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis