Browse Element(s) Details


Os.53481.1.S1_x_at

Description gb:AK100738.1
DB_XREF= gi:32985947
TID=Os.53481.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118C24, full insert sequence.
FL= gb:AK100738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5144011/11Villin-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os04g51460Os.11354.1.S1_at11/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51460OsAffx.9796.1.S1_x_at1/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0030835biological_processnegative regulation of actin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53481.1.S1_x_at--637--6191Chr04:30245379..30245403 (25 bp)
GAGGAAGGCTCAACGATCGGTGAAA
LOC_Os04g51440
Os.53481.1.S1_x_at--786--6371Chr04:30245283..30245307 (25 bp)
GATCCTGCTCCTGACATTGATGTTA
LOC_Os04g51440
Os.53481.1.S1_x_at--631--4611Chr04:30245168..30245278 (25 bp)
GCGAGAGGTCTACTTATCATCAGTT
LOC_Os04g51440
Os.53481.1.S1_x_at--169--8291Chr04:30245114..30245138 (25 bp)
GGCATCATTCAAAAACCTTCCAAAA
LOC_Os04g51440
Os.53481.1.S1_x_at--230--2331Chr04:30245072..30245096 (25 bp)
AAAGTCTGATCTCCAGCTCTTTTAG
LOC_Os04g51440
Os.53481.1.S1_x_at--247--1571Chr04:30245058..30245082 (25 bp)
AGCTCTTTTAGCTCAACTCTGAGGA
LOC_Os04g51440
Os.53481.1.S1_x_at--37--10751Chr04:30245014..30245038 (25 bp)
TTGAAGGCATCACCCATTTTTGAGG
LOC_Os04g51440
Os.53481.1.S1_x_at--467--151Chr04:30244999..30245023 (25 bp)
ATTTTTGAGGGCACGCAATTTCCGT
LOC_Os04g51440
Os.53481.1.S1_x_at--914--3831Chr04:30244939..30244963 (25 bp)
CTGCTATTGCTCTAGGATCACCCTG
LOC_Os04g51440
Os.53481.1.S1_x_at--234--1811Chr04:30244920..30244944 (25 bp)
ACCCTGCTCTTTCTGCAGTAGCAAG
LOC_Os04g51440
Os.53481.1.S1_x_at--117--1691Chr04:30244827..30244851 (25 bp)
AGCCTCGCATTTTTGTGCCGCTACA
LOC_Os04g51440
Target Sequence 
GAGGAAGGCTCAACGATCGGTGAAAGTGAAAACGNGCCAGAAGATGATGAGAACAGCACAANCTACCCATATGANCGTTT
GACCACCACATCTGATGATCCTGCTCCTGACATTGATGTTACCAAGCGAGAGGTCTACTTATCATCAGTTGAGTTCNCAG
AGAAGTTTGGCATGACAAGGGCATCATTCAAAAACCTTCCAAAATGGAAGCANAACAGGCTAAAGTCTGATCTCCAGCTC
TTTTAGCTCAACTCTGAGGAACAGCCCCTTGTCCTCGCCTTGAAGGCATCACCCATTTTTGAGGGCACGCAATTTCCGTG
CCATTCTCGAGTTCTTCTCTTCACCTATTTTGGNCTGCTATTGCTCTAGGATCACCCTGCTCTTTCTGCAGTAGCAAGTA
GGTCTTTTGGTAGTGNTTTTCTTTTCCCTTTATTGATATAGAGTGCTCATGAATGNTTCTGNTGNGAGCCTCGCATTTTT
GTGCCGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53481.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis