Browse Element(s) Details


Os.5873.1.S1_at

Description gb:AK100301.1
DB_XREF= gi:32985510
TID=Os.5873.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.5873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full insert sequence.
FL= gb:AK059404.1 gb:AK100301.1 gb:AK072200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5140011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5873.1.S1_at--686--5191Chr04:30220963..30220987 (25 bp)
GAATTGGCACCGTAAGCACTGGCCT
LOC_Os04g51400
Os.5873.1.S1_at--786--1451Chr04:30220935..30220959 (25 bp)
AGAAGACGCGCTGTCCAAGTGTCTA
LOC_Os04g51400
Os.5873.1.S1_at--541--3511Chr04:30220902..30220926 (25 bp)
CATGTACATGGCCACTACTTCAGGA
LOC_Os04g51400
Os.5873.1.S1_at--1022--7171Chr04:30220704..30220728 (25 bp)
GTCTGCAAACATTACTACCACTTCT
LOC_Os04g51400
Os.5873.1.S1_at--1162--9231Chr04:30220680..30220704 (25 bp)
TCCTGCATAAAGAACTGGCTCCGGC
LOC_Os04g51400
Os.5873.1.S1_at--339--6991Chr04:30220634..30220658 (25 bp)
GTAAATCCGTCGCTCTGAATACCAA
LOC_Os04g51400
Os.5873.1.S1_at--767--5111Chr04:30220606..30220630 (25 bp)
GCACTAGCAGGGTGCTTCTTCAGAA
LOC_Os04g51400
Os.5873.1.S1_at--78--6571Chr04:30220569..30220593 (25 bp)
GATTCTCCATGAATGTTCTACCCAG
LOC_Os04g51400
Os.5873.1.S1_at--514--6731Chr04:30220555..30220579 (25 bp)
GTTCTACCCAGACACAATTTGCATT
LOC_Os04g51400
Os.5873.1.S1_at--127--571Chr04:30220491..30220515 (25 bp)
ATCCTCCAGACCTTTTGCATTATTG
LOC_Os04g51400
Os.5873.1.S1_at--792--4931Chr04:30220475..30220499 (25 bp)
GCATTATTGGTCTCCTTCAGTTCAC
LOC_Os04g51400
Target Sequence 
GAATTGGCACCGTAAGCACTGGCCTTTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTACT
TCAGGAACTCATGAAGATTGTGAGAGAAAATGCAGCATATGCCAGGAGGAATATTCAGATGGTGAGGAGGTGGGCAAGAT
GGTCTGCAAACATTACTACCACTTCTCCTGCATAAAGAACTGGCTCCGGCAGAAGAACTGGTGTCCCATTTGTAAATCCG
TCGCTCTGAATACCAACTAGCACTAGCAGGGTGCTTCTTCAGAAACCAAATGTACAGATTCTCCATGAATGTTCTACCCA
GACACAATTTGCATTCTTTTTTTGATACTCTTTTAGATCGAACCATTCGTTCGCATCCTCCAGACCTTTTGCATTATTGG
TCTCCTTCAGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis