Browse Element(s) Details

Os.52268.1.S1_at

Description

gb:AK065982.1
DB_XREF= gi:32976000
TID=Os.52268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045J05, full insert sequence.
FL= gb:AK065982.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g51380	11/11	Isoprenylcysteine carboxyl methyltransferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g51340	Os.8064.1.S1_at	11/11	4	+	30186395..30190272	Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350	Os.50298.1.S1_at	10/11	4	+	30191026..30194081	pentatricopeptide, putative, expressed
LOC_Os04g51360	OsAffx.4146.1.S1_at	11/11	4	+	30194705..30196609	oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370	Os.12653.1.S1_at	11/11	4	+	30197384..30205069	Protein kinase domain containing protein, expressed
LOC_Os04g51380	Os.52268.1.S1_at	11/11	4	+	30209137..30212604	Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380	Os.7851.1.S1_x_at	10/11	4	+	30209137..30212604	Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380	Os.52268.1.S1_x_at	10/11	4	+	30209137..30212604	Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390	OsAffx.14365.1.S1_at	11/11	4	+	30214129..30219237	Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390	Os.34698.1.S1_x_at	10/11	4	+	30214129..30219237	Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400	Os.5873.1.S1_at	11/11	4	+	30220395..30223780	Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404	Os.54761.1.S1_at	11/11	4	+	30223061..30225142	expressed protein
LOC_Os04g51410	Os.37811.1.S1_at	11/11	4	+	30226799..30232294	NA
LOC_Os04g51410	OsAffx.14366.1.S1_at	10/11	4	+	30226799..30232294	NA
LOC_Os04g51420	OsAffx.13041.1.S1_at	10/11	4	+	30235388..30236585	transposon protein, putative, unclassified
LOC_Os04g51420	OsAffx.13041.1.S1_x_at	8/11	4	+	30235388..30236585	transposon protein, putative, unclassified
LOC_Os04g51420	OsAffx.13041.4.S1_x_at	5/11	4	+	30235388..30236585	transposon protein, putative, unclassified
LOC_Os04g51420	OsAffx.13041.4.S1_at	4/11	4	+	30235388..30236585	transposon protein, putative, unclassified
LOC_Os04g51420	Os.28110.1.S1_x_at	1/11	4	+	30235388..30236585	transposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0006481	biological_process	C-terminal protein amino acid methylation
GO:0004671	molecular_function	protein-S-isoprenylcysteine O-methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52268.1.S1_at--455--897	1	Chr04:30212129..30212153 (25 bp)	TGAACTTTTTTTCCTCTACTAGGAG	LOC_Os04g51380
Os.52268.1.S1_at--967--1035	1	Chr04:30212136..30212160 (25 bp)	TTTTTCCTCTACTAGGAGACATTGG	LOC_Os04g51380
Os.52268.1.S1_at--990--371	1	Chr04:30212144..30212168 (25 bp)	CTACTAGGAGACATTGGAAACTGCT	LOC_Os04g51380
Os.52268.1.S1_at--56--371	1	Chr04:30212147..30212171 (25 bp)	CTAGGAGACATTGGAAACTGCTAAT	LOC_Os04g51380
Os.52268.1.S1_at--830--805	1	Chr04:30212150..30212174 (25 bp)	GGAGACATTGGAAACTGCTAATGCT	LOC_Os04g51380
Os.52268.1.S1_at--95--199	1	Chr04:30212163..30212187 (25 bp)	ACTGCTAATGCTGTTCTTTTTTGGG	LOC_Os04g51380
Os.52268.1.S1_at--1074--383	1	Chr04:30212164..30212188 (25 bp)	CTGCTAATGCTGTTCTTTTTTGGGT	LOC_Os04g51380
Os.52268.1.S1_at--521--669	1	Chr04:30212175..30212199 (25 bp)	GTTCTTTTTTGGGTACAGGTGTGCT	LOC_Os04g51380
Os.52268.1.S1_at--368--955	1	Chr04:30212177..30212201 (25 bp)	TCTTTTTTGGGTACAGGTGTGCTTA	LOC_Os04g51380
Os.52268.1.S1_at--357--1021	1	Chr04:30212182..30212206 (25 bp)	TTTGGGTACAGGTGTGCTTACCTCC	LOC_Os04g51380
Os.52268.1.S1_at--671--1009	1	Chr04:30212183..30212207 (25 bp)	TTGGGTACAGGTGTGCTTACCTCCC	LOC_Os04g51380

Target Sequence

TGAACTTTTTTTCCTCTACTAGGAGACATTGGAAACTGCTAATGCTGTTCTTTTTTGGGTACAGGTGTGCTTACCTCCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis