Browse Element(s) Details


Os.54761.1.S1_at

Description gb:AK106704.1
DB_XREF= gi:32991913
TID=Os.54761.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E07, full insert sequence.
FL= gb:AK106704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5140411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54761.1.S1_at--670--7151Chr04:30224544..30224568 (25 bp)
GTCTTTGCTCGCCATAATTCAGGTC
LOC_Os04g51404
Os.54761.1.S1_at--428--8911Chr04:30224631..30224655 (25 bp)
TGAGCTTTCATTTGGATGCACACAT
LOC_Os04g51404
Os.54761.1.S1_at--527--10191Chr04:30224665..30224689 (25 bp)
TATTAAGCATGGACTCCAACCCCAA
LOC_Os04g51404
Os.54761.1.S1_at--634--851Chr04:30224763..30224787 (25 bp)
ATGGCAAGCCACAGGCTGATCTCGT
LOC_Os04g51404
Os.54761.1.S1_at--231--8851Chr04:30224779..30224803 (25 bp)
TGATCTCGTCATGCTGCCGACTTGG
LOC_Os04g51404
Os.54761.1.S1_at--751--4511Chr04:30224794..30224818 (25 bp)
GCCGACTTGGCAATCTGTGGATTCT
LOC_Os04g51404
Os.54761.1.S1_at--713--3151Chr04:30224865..30224889 (25 bp)
AATTCCCTGTAGTTTGTGGCTCACG
LOC_Os04g51404
Os.54761.1.S1_at--717--9671Chr04:30224885..30224909 (25 bp)
TCACGCATTGCTCTGACTTATACGG
LOC_Os04g51404
Os.54761.1.S1_at--1030--1051Chr04:30224946..30224970 (25 bp)
AGGTGGCTTGTGTAGACGGCTCCAT
LOC_Os04g51404
Os.54761.1.S1_at--181--3931Chr04:30224962..30224986 (25 bp)
CGGCTCCATAGGATGCTTTTACTTC
LOC_Os04g51404
Os.54761.1.S1_at--426--10371Chr04:30224991..30225015 (25 bp)
TTTTTTCTTCTCTTATCTCCAGCTG
LOC_Os04g51404
Target Sequence 
GTCTTTGCTCGCCATAATTCAGGTCGATTTCTTAATGATATAGCAGAGTTAATAGTACATGGAGAAGTAGGAGTACTTGA
TAACAACTGAGCTTTCATTTGGATGCACACATCACACACACTATTAAGCATGGACTCCAACCCCAAGCTTGTGAAAACTT
ATCTGCAAAAAATATTCTAATTGCACAAGAGATGGAGATAGAATCTTCAGATAAAAACAATGGCAAGCCACAGGCTGATC
TCGTCATGCTGCCGACTTGGCAATCTGTGGATTCTTCAAATTGAGGACAAGATAAAAAGGAAGCTTTTTTTTTTAATCTA
TAATTCCCTGTAGTTTGTGGCTCACGCATTGCTCTGACTTATACGGCACAAATTTGATTAGAAATCGTTTTCATACCGAG
TGAGGTGGCTTGTGTAGACGGCTCCATAGGATGCTTTTACTTCTTTTTTTTTTCTTCTCTTATCTCCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis