Browse Element(s) Details


OsAffx.3921.1.S1_x_at

Description tigr:9632.m02618
TID=OsAffx.3921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2777011/11hypothetical protein
LOC_Os04g514401/11Villin-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein
LOC_Os04g27750NANA4+16214751..16215310expressed protein
LOC_Os04g27760NANA4+16220057..16223444Terpene synthase family, metal binding domain containing protein
LOC_Os04g27770OsAffx.3921.1.S1_x_at11/114+16226562..16227224hypothetical protein
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27800Os.11829.1.S1_at3/114+16239598..16241515expressed protein
LOC_Os04g27810NANA4+16244655..16245116hypothetical protein
LOC_Os04g27820OsAffx.3922.1.S1_at11/114+16249016..16250792hypothetical protein
LOC_Os04g27820Os.57335.1.S1_at1/114+16249016..16250792hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0030835biological_processnegative regulation of actin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3921.1.S1_x_at--399--4691Chr04:16227156..16227180 (25 bp)
GCGGAGAGGCGAGGCAGCAACGGCG
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--222--8054Chr08:19720525..19720679 (25 bp)
GGAGAGGCGAGGCAGCAACGGCGGC
NONE
OsAffx.3921.1.S1_x_at--759--4611Chr04:16227103..16227127 (25 bp)
GCGAGCGGCGGCTGGGTGGCAAGCG
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--1036--8471Chr04:16227059..16227083 (25 bp)
TGGCGGCAAGGCGAGATCCTCATTG
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--926--8351Chr04:16227058..16227082 (25 bp)
GGCGGCAAGGCGAGATCCTCATTGA
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--557--4691Chr04:16227057..16227081 (25 bp)
GCGGCAAGGCGAGATCCTCATTGAT
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--259--8231Chr04:16227055..16227079 (25 bp)
GGCAAGGCGAGATCCTCATTGATGT
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--700--5171Chr04:16227054..16227078 (25 bp)
GCAAGGCGAGATCCTCATTGATGTA
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--455--3211Chr04:16227053..16227077 (25 bp)
CAAGGCGAGATCCTCATTGATGTAA
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--473--2951Chr04:16227052..16227076 (25 bp)
AAGGCGAGATCCTCATTGATGTAAA
LOC_Os04g27770
OsAffx.3921.1.S1_x_at--840--891Chr04:16227051..16227075 (25 bp)
AGGCGAGATCCTCATTGATGTAAAA
LOC_Os04g27770
Target Sequence 
GCGGAGAGGCGAGGCAGCAACGGCGGCGAGGCAGGGTGGTGCAGGGGGTGGGCGCGAGCGGCGGCTGGGTGGCAAGCGGC
GGCGGAGGAGGCGAGCGTGGCGGCAAGGCGAGATCCTCATTGATGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis