Browse Element(s) Details


OsAffx.14003.1.S1_at

Description tigr:9632.m02615
TID=OsAffx.14003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2774010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27720OsAffx.26190.1.S1_at11/114+16192873..16197397Terpene synthase, N-terminal domain containing protein
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein
LOC_Os04g27750NANA4+16214751..16215310expressed protein
LOC_Os04g27760NANA4+16220057..16223444Terpene synthase family, metal binding domain containing protein
LOC_Os04g27770OsAffx.3921.1.S1_x_at11/114+16226562..16227224hypothetical protein
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14003.1.S1_at--813--32Chr05:15563541..15563561 (21 bp)
ATTGGGTGGCCATTAGCAGCCACGA
NONE
OsAffx.14003.1.S1_at--1087--4432Chr05:15563545..15563569 (25 bp)
GCCATTAGCAGCCACGAGCGAAAAT
NONE
OsAffx.14003.1.S1_at--1152--5071Chr04:16210533..16210557 (25 bp)
GCAGCCACGAGCGAAAATCATATTT
LOC_Os04g27740
OsAffx.14003.1.S1_at--315--2451Chr04:16210546..16210566 (21 bp)
AAAATCATATTTTCGTTGGCATATG
LOC_Os04g27740
OsAffx.14003.1.S1_at--1032--4031Chr04:16210559..16210764 (25 bp)
CGTTGGCATATGTTTCGTTCTGGAT
LOC_Os04g27740
OsAffx.14003.1.S1_at--962--3571Chr04:16210748..16210770 (23 bp)
CATATGTTTCGTTCTGGATGTGGAA
LOC_Os04g27740
OsAffx.14003.1.S1_at--972--5271Chr04:16210774..16210798 (25 bp)
GAATGTTTGGTTGTAGAGATACTCC
LOC_Os04g27740
OsAffx.14003.1.S1_at--715--10771Chr04:16210784..16210808 (25 bp)
TTGTAGAGATACTCCAAGAAATGCC
LOC_Os04g27740
OsAffx.14003.1.S1_at--709--2271NONE
AAATGCCATCGATAAGTGGTACACT
NONE
OsAffx.14003.1.S1_at--154--2771Chr04:16211356..16211376 (21 bp)
AAGTGGTACACTTAATCGTTCAGTG
LOC_Os04g27740
OsAffx.14003.1.S1_at--1088--9831Chr04:16211358..16211382 (25 bp)
TACACTTAATCGTTCAGTGGGAACA
LOC_Os04g27740
Target Sequence 
ATTGGGTGGCCATTAGCAGCCACGAGCGAAAATCATATTTTCGTTGGCATATGTTTCGTTCTGGATGTGGAAGATGAATG
TTTGGTTGTAGAGATACTCCAAGAAATGCCATTGACAAGCGTCCAAGTCCCAGAAATGCCATCGATAAGTGGTACACTTA
ATCGTTCAGTGGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis