Browse Element(s) Details


OsAffx.26189.1.S1_at

Description tigr:9632.m02611
TID=OsAffx.26189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2770011/11expressed protein
LOC_Os04g114802/11retrotransposon protein, putative, unclassified
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g064301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g208901/11retrotransposon, putative, centromere-specific
LOC_Os11g182401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27660NANA4+16160656..16161851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27670OsAffx.3920.1.S1_s_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670OsAffx.3920.1.S1_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670Os.13759.1.S1_at2/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27720OsAffx.26190.1.S1_at11/114+16192873..16197397Terpene synthase, N-terminal domain containing protein
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26189.1.S1_at--812--5577Chr11:10258150..10258169 (20 bp)
GAAATACGACGAACGACGACCGGCG
LOC_Os11g18240
OsAffx.26189.1.S1_at--91--4711Chr04:16185096..16185120 (25 bp)
GCGGCGGCGCTCACGCGAGATGCAG
LOC_Os04g27700
OsAffx.26189.1.S1_at--1063--8233Chr11:12493660..12493680 (21 bp)
GGCAGCGACGCTAGGGCTCACGTGG
NONE
OsAffx.26189.1.S1_at--650--8351Chr04:16184937..16184961 (25 bp)
GGCGGCGCTACAGGCAACGGCTGCG
LOC_Os04g27700
OsAffx.26189.1.S1_at--733--2571Chr04:16184922..16184946 (25 bp)
AACGGCTGCGGCTAAGACTTGAGGC
LOC_Os04g27700
OsAffx.26189.1.S1_at--2--4771Chr04:16184918..16184942 (25 bp)
GCTGCGGCTAAGACTTGAGGCAAAC
LOC_Os04g27700
OsAffx.26189.1.S1_at--251--6131Chr04:16184853..16184877 (25 bp)
GAGGGAGATCGGACTCCATACGAGA
LOC_Os04g27700
OsAffx.26189.1.S1_at--746--491Chr04:16184846..16184870 (25 bp)
ATCGGACTCCATACGAGAGGATTTG
LOC_Os04g27700
OsAffx.26189.1.S1_at--300--35710Chr12:11844701..11844725 (25 bp)
CATACGAGAGGATTTGAGCCGGAAA
NONE
OsAffx.26189.1.S1_at--265--99329Chr12:11844703..11844727 (25 bp)
TACGAGAGGATTTGAGCCGGAAAAT
NONE
OsAffx.26189.1.S1_at--1056--3032Chr04:16184813..16184837 (25 bp)
AATCCGATGGTTAGTTTGGAGAAAT
LOC_Os04g27700
Target Sequence 
GAAATACGACGAACGACGACCGGCGACGAGCTCCGACAGCGGCACGGCTCGGCTTGATGTCGGCGGCGGCGCTCACGCGA
GATGCAGCAGCGGCGAAGGGGCGGACGGGATGCTCCTCCACCTGGCGAACCCGACGGTGGCGACGGAAGGCGGCAGCGGC
GACCACAGCTGCGGCGCGGCTGAAGCAGCGACGGCGGCAGCGACGCTAGGGCTCACGTGGCGGCGGCGCTACAGGCAACG
GCTGCGGCTAAGACTTGAGGCAAACGGAAGAGGACGACTAGGGGATGCTTTATATAGGCATGGGTGAGGGAGATCGGACT
CCATACGAGAGGATTTGAGCCGGAAAATCCGATGGTTAGTTTGGAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis