Browse Element(s) Details


OsAffx.29788.1.S1_x_at

Description tigr:9637.m00791
TID=OsAffx.29788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1032011/11retrotransposon protein, putative, unclassified
LOC_Os04g277002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10280OsAffx.17631.1.S1_at11/119+5600227..5601061hypothetical protein
LOC_Os09g10290NANA9+5604607..5606833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10300Os.53132.1.S1_at11/119+5609377..5610032Skp1 family, dimerisation domain containing protein, expressed
LOC_Os09g10310NANA9+5619905..5621325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10320OsAffx.29788.1.S1_x_at11/119+5623093..5623416retrotransposon protein, putative, unclassified
LOC_Os09g10330OsAffx.6223.1.S1_at11/119+5624475..5625305hypothetical protein
LOC_Os09g10340Os.17076.1.S1_at10/119+5642295..5644523Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29788.1.S1_x_at--263--9432Chr09:5623130..5623154 (25 bp)
TCGGGCGGCTAAACCGAAGGCACCT
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--928--5294Chr10:4808278..4808297 (20 bp)
GAAGGCACCTACACGAAGAGTATGA
NONE
OsAffx.29788.1.S1_x_at--117--1351Chr09:5623161..5623185 (25 bp)
AGAGTATGACGAGGCGAACTCACCG
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--24--1793Chr09:5623182..5623206 (25 bp)
ACCGGTGCAAAGAACTACGACAGAC
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--797--7771Chr09:5623185..5623209 (25 bp)
GGTGCAAAGAACTACGACAGACGAC
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--374--7351Chr09:5623186..5623210 (25 bp)
GTGCAAAGAACTACGACAGACGACA
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--133--3271Chr09:5623189..5623213 (25 bp)
CAAAGAACTACGACAGACGACAACG
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--608--3711Chr09:5623196..5623220 (25 bp)
CTACGACAGACGACAACGAACGAAG
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--650--2091Chr09:5623201..5623225 (25 bp)
ACAGACGACAACGAACGAAGGCCGA
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--566--1251Chr09:5623203..5623227 (25 bp)
AGACGACAACGAACGAAGGCCGACG
LOC_Os09g10320
OsAffx.29788.1.S1_x_at--1026--3971Chr09:5623277..5623301 (25 bp)
CGGTGGCTTGCGACGGCTGCGAAGG
LOC_Os09g10320
Target Sequence 
TCGGGCGGCTAAACCGAAGGCACCTACACGAAGAGTATGACGAGGCGAACTCACCGGTGCAAAGAACTACGACAGACGAC
AACGAACGAAGGCCGACGACGAGCTCCGACGGCGGCACGGCTCGGCTCGATGTCAGCGGCGGCCCTCCGGTGGCTTGCGA
CGGCTGCGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29788.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis