Browse Element(s) Details


Os.53132.1.S1_at

Description gb:AK070953.1
DB_XREF= gi:32980976
TID=Os.53132.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074H10, full insert sequence.
FL= gb:AK070953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1030011/11Skp1 family, dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10260Os.55370.1.S1_at3/119+5586916..5587413SKP1-like protein 1A, putative
LOC_Os09g10270OsAffx.29787.1.S1_at11/119+5593786..5594304SKP1-like protein 1A, putative
LOC_Os09g10280OsAffx.17631.1.S1_at11/119+5600227..5601061hypothetical protein
LOC_Os09g10290NANA9+5604607..5606833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10300Os.53132.1.S1_at11/119+5609377..5610032Skp1 family, dimerisation domain containing protein, expressed
LOC_Os09g10310NANA9+5619905..5621325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10320OsAffx.29788.1.S1_x_at11/119+5623093..5623416retrotransposon protein, putative, unclassified
LOC_Os09g10330OsAffx.6223.1.S1_at11/119+5624475..5625305hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53132.1.S1_at--1162--5351Chr09:5609449..5609473 (25 bp)
GAAGACGATCGATCTCGTCAGCAAG
LOC_Os09g10300
Os.53132.1.S1_at--947--6411Chr09:5609459..5609483 (25 bp)
GATCTCGTCAGCAAGGACGGCGAGC
LOC_Os09g10300
Os.53132.1.S1_at--310--4711Chr09:5609504..5609528 (25 bp)
GCGGCGCTGCTGTGCAAGACGCTTC
LOC_Os09g10300
Os.53132.1.S1_at--809--9011Chr09:5609516..5609540 (25 bp)
TGCAAGACGCTTCGGTGGATGATCA
LOC_Os09g10300
Os.53132.1.S1_at--534--7091Chr09:5609828..5609852 (25 bp)
GTCAACGATCTCACGCCGGAGGAGG
LOC_Os09g10300
Os.53132.1.S1_at--772--8011Chr09:5609866..5609890 (25 bp)
GGAGGACATCGCTTGGGCGCTCAAC
LOC_Os09g10300
Os.53132.1.S1_at--877--4831Chr09:5609884..5609908 (25 bp)
GCTCAACTAGCTATGCTCATCTACA
LOC_Os09g10300
Os.53132.1.S1_at--18--10791Chr09:5609923..5609947 (25 bp)
TTGTTTTGATTTTCTTGCGCACCTC
LOC_Os09g10300
Os.53132.1.S1_at--440--4591Chr09:5609939..5609963 (25 bp)
GCGCACCTCGCACATATGGATGTAT
LOC_Os09g10300
Os.53132.1.S1_at--698--831Chr09:5609954..5609978 (25 bp)
ATGGATGTATCCCTCTTTAATCTTT
LOC_Os09g10300
Os.53132.1.S1_at--1049--531Chr09:5609962..5609986 (25 bp)
ATCCCTCTTTAATCTTTCTCAAACA
LOC_Os09g10300
Target Sequence 
GAAGACGATCGATCTCGTCAGCAAGGACGGCGAGCGGTTCGAGGTGGCGAGGGACGCGGCGCTGCTGTGCAAGACGCTTC
GGTGGATGATCAAGGGCGGCTACGGCCGGATCCCGCTCCCCAACGTCGCCTCCCCGATCCTCGCCAGGGTCGTCGACTAC
CTCGCCCGGCATGCCGCCGCCGCCGCCGCCATGGACGACGACGGCCTCGACAGGTTCGACCGCGACTTCCTCGCCGGCGT
CGACCAGGACACGCTGTTCGACCTCCTCCTCGCCGCCAACTACCTCCAGGCCGACGGCCTCCTCGACCTCGCCTGCAAGA
AGGTCGCCGCCATGATGACCGGCAAGTCGCCGGAGCAGATGCGGGAGATCTTCCACATCGTCAACGATCTCACGCCGGAG
GAGGAGAAGGAGATCCGGGAGGACATCGCTTGGGCGCTCAACTAGCTATGCTCATCTACAACATGTAATATACTTTGTTT
TGATTTTCTTGCGCACCTCGCACATATGGATGTATCCCTCTTTAATCTTTCTCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis