Browse Element(s) Details


Os.55370.1.S1_at

Description gb:AK107960.1
DB_XREF= gi:32993169
TID=Os.55370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C08, full insert sequence.
FL= gb:AK107960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1020011/11SKP1-like protein 1A, putative, expressed
LOC_Os09g102603/11SKP1-like protein 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10170NANA9+5526640..5532450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10180NANA9+5538419..5538931hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_x_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.23450.1.S1_at2/119+5542051..5544026hypothetical protein
LOC_Os09g10190Os.46012.1.S1_at1/119+5542051..5544026hypothetical protein
LOC_Os09g10200Os.55370.1.S1_at11/119+5553239..5554029SKP1-like protein 1A, putative, expressed
LOC_Os09g10204Os.51444.1.S1_at11/119+5555531..5556221expressed protein
LOC_Os09g10210OsAffx.6222.1.S1_x_at11/119+5558196..5558420hypothetical protein
LOC_Os09g10220Os.45173.1.S1_x_at6/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_x_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10230OsAffx.29787.1.S1_at11/119+5573829..5574332SKP1-like protein 1A, putative
LOC_Os09g10240NANA9+5575424..5582937retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55370.1.S1_at--348--5932Chr09:5587294..5587318 (25 bp)
GAGCATGTCGAAGCTAGTGAGCAAC
LOC_Os09g10260
Os.55370.1.S1_at--278--592Chr09:5587118..5587142 (25 bp)
ATGCCAGCTTCATCGATGTCGACAA
LOC_Os09g10260
Os.55370.1.S1_at--1063--5611Chr09:5553578..5553602 (25 bp)
GACAACACGATGCTGTTCGGCCTGA
LOC_Os09g10200
Os.55370.1.S1_at--540--10871Chr09:5553551..5553575 (25 bp)
TTGGCCGCCAACTACTTGAACGTAC
LOC_Os09g10200
Os.55370.1.S1_at--161--10731Chr09:5553536..5553560 (25 bp)
TTGAACGTACCGTCTCTACTTGATC
LOC_Os09g10200
Os.55370.1.S1_at--194--7171Chr09:5553525..5553549 (25 bp)
GTCTCTACTTGATCTTGCGTGTCAA
LOC_Os09g10200
Os.55370.1.S1_at--351--2472Chr09:5587022..5587046 (25 bp)
AACACACGGCTGACTTGATCAAGGG
LOC_Os09g10260
Os.55370.1.S1_at--897--8131Chr09:5553456..5553480 (25 bp)
GGACACGTTCGGGATCGTCAACGAC
LOC_Os09g10200
Os.55370.1.S1_at--617--8651Chr09:5553389..5553413 (25 bp)
TGGGCCTTCGAGAACTGAACCATTT
LOC_Os09g10200
Os.55370.1.S1_at--118--8991Chr09:5553373..5553398 (25 bp)
TGAACCATTTCCTTTTTCTTAGAAG
LOC_Os09g10200
Os.55370.1.S1_at--330--791Chr09:5553251..5553275 (25 bp)
ATGTGTTGTTTACTATTCCCTCTGT
LOC_Os09g10200
Target Sequence 
GAGCATGTCGAAGCTAGTGAGCAACATGATCGAGGACGACTGCACGGAGAACGGCGTCCCTCTCCCCAACGTCGCCTCCA
ACGTCCTCGCCAAGGTGCTCGACTACTGCAAGAAACACGCCGCCGCCGCCGCCGCCGCTGCCGAGGACGTCGCCGTGAAG
GATCAGGAGCTGAAGAGCTTCGATGCCAGCTTCATCGATGTCGACAACACGATGCTGTTCGGCCTGATCTTGGCCGCCAA
CTACTTGAACGTACCGTCTCTACTTGATCTTGCGTGTCAACACACGGCTGACTTGATCAAGGGCAAGACGGTACAGGAGA
TCAGGGACACGTTCGGGATCGTCAACGACTTCACACCAGAGGAGGAGGAGGAGATCCGCAAGGAGAACGAATGGGCCTTC
GAGAACTGAACCATTTCCTTTTTCTTAGAAGAATTTCCAGGCTAGTAGGGAAGAAGTTTGATCGGAATAAATATAAAATC
TTTTTCTTAATACTATTTAATGATTGACAAGATATTTAGTCATTTGTTATGTGTTGTTTACTATTCCCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis