Browse Element(s) Details


OsAffx.29787.1.S1_at

Description tigr:9637.m00785
TID=OsAffx.29787.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1023011/11SKP1-like protein 1A, putative
LOC_Os09g1027011/11SKP1-like protein 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10200Os.55370.1.S1_at11/119+5553239..5554029SKP1-like protein 1A, putative, expressed
LOC_Os09g10204Os.51444.1.S1_at11/119+5555531..5556221expressed protein
LOC_Os09g10210OsAffx.6222.1.S1_x_at11/119+5558196..5558420hypothetical protein
LOC_Os09g10220Os.45173.1.S1_x_at6/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_x_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10230OsAffx.29787.1.S1_at11/119+5573829..5574332SKP1-like protein 1A, putative
LOC_Os09g10240NANA9+5575424..5582937retrotransposon protein, putative, unclassified
LOC_Os09g10250NANA9+5584021..5584287hypothetical protein
LOC_Os09g10260Os.55370.1.S1_at3/119+5586916..5587413SKP1-like protein 1A, putative
LOC_Os09g10270OsAffx.29787.1.S1_at11/119+5593786..5594304SKP1-like protein 1A, putative

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29787.1.S1_at--931--512Chr09:5594148..5594172 (25 bp)
ATCGAGGATGACTGCGCCACCAACG
LOC_Os09g10270
OsAffx.29787.1.S1_at--235--9392Chr09:5594147..5594171 (25 bp)
TCGAGGATGACTGCGCCACCAACGG
LOC_Os09g10270
OsAffx.29787.1.S1_at--402--9352Chr09:5593970..5593994 (25 bp)
TCGACAGGAAGAAGTTGTTCGGCCT
LOC_Os09g10270
OsAffx.29787.1.S1_at--247--952Chr09:5593965..5593989 (25 bp)
AGGAAGAAGTTGTTCGGCCTGATCA
LOC_Os09g10270
OsAffx.29787.1.S1_at--494--8192Chr09:5593964..5593988 (25 bp)
GGAAGAAGTTGTTCGGCCTGATCAA
LOC_Os09g10270
OsAffx.29787.1.S1_at--773--5372Chr09:5593963..5593987 (25 bp)
GAAGAAGTTGTTCGGCCTGATCAAT
LOC_Os09g10270
OsAffx.29787.1.S1_at--861--1452Chr09:5593961..5593985 (25 bp)
AGAAGTTGTTCGGCCTGATCAATGC
LOC_Os09g10270
OsAffx.29787.1.S1_at--83--3272Chr09:5593933..5593957 (25 bp)
CAACTTCCTGAACATGCCGTGCCTG
LOC_Os09g10270
OsAffx.29787.1.S1_at--984--5012Chr09:5593855..5593879 (25 bp)
GCAGGTCAGGGAGGTATTTGGGATC
LOC_Os09g10270
OsAffx.29787.1.S1_at--821--6152Chr09:5593845..5593869 (25 bp)
GAGGTATTTGGGATCGAGAACGACT
LOC_Os09g10270
OsAffx.29787.1.S1_at--596--1012Chr09:5593844..5593868 (25 bp)
AGGTATTTGGGATCGAGAACGACTT
LOC_Os09g10270
Target Sequence 
ATCGAGGATGACTGCGCCACCAACGGCGCCATCCCTCTCGCCAACGTCGCCNCCGANATCCTCGCCANGGTGGTCGAGTA
CTGCAACANGCACGCCGCCGCCNNNNNNNNNNNNNNNNNNGCCGCGAANGCTAGCGGNNAGGAGGAGCTCANNNGNAAGT
TCGACGCCGAGTTCGTCANCNTCGACAGGAAGAAGTTGTTCGGCCTGATCAATGCNGCCAACTTCCTGAACATGCCGTGC
CTGNTGGAGCTGACATGCCAGCGCNCGGCGGACTTGATCAAAGACATGATGCCGGAGCAGGTCAGGGAGGTATTTGGGAT
CGAGAACGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis