Browse Element(s) Details


Os.45976.1.S1_at

Description gb:NM_195924.1
DB_XREF= gi:37533207
TID=Os.45976.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0078C13.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0078C13.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g208109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g403805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g199605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g115805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g134305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g125705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g118505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g264205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g035305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g411905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g376205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g406605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g345905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g260803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g357623/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g425403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g083703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g037703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g362803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g116903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g287702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g195902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g207902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g236302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g121002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g145602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g041402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g283702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g093202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g158502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g114102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g079802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g271802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g102201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g094201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g019841/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20770Os.46863.1.S1_at11/1110+10199273..10201900expressed protein
LOC_Os10g20770Os.50862.1.S1_x_at1/1110+10199273..10201900expressed protein
LOC_Os10g20780OsAffx.14826.2.S1_at1/1110+10210730..10211782Transposable element protein, putative, Retrotrans_gag
LOC_Os10g20794Os.46306.1.S1_x_at6/1110+10216234..10219535transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_x_at11/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_at9/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20820OsAffx.20481.1.S1_at11/1110+10230068..10230433hypothetical protein
LOC_Os10g20830Os.46837.1.S1_at11/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20830OsAffx.30467.1.S1_x_at1/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20840NANA10+10235110..10235523Cortical cell delineating protein precursor, putative
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45976.1.S1_at--234--55931Chr12:1535716..1535958 (25 bp)
GAAATGATCGACAAAGTCACTGTGT
LOC_Os12g03770
Os.45976.1.S1_at--196--22924Chr11:20495856..20496098 (25 bp)
AAATGATCGACAAAGTCACTGTGTA
LOC_Os11g35762
Os.45976.1.S1_at--677--29918Chr10:4301454..4301696 (25 bp)
AATGATCGACAAAGTCACTGTGTAC
LOC_Os10g08370
Os.45976.1.S1_at--242--7125Chr12:1535719..1535961 (25 bp)
ATGATCGACAAAGTCACTGTGTACG
LOC_Os12g03770
Os.45976.1.S1_at--209--88533Chr12:1535720..1535962 (25 bp)
TGATCGACAAAGTCACTGTGTACGA
LOC_Os12g03770
Os.45976.1.S1_at--131--3691Chr10:10225590..10225614 (25 bp)
CTATGACGGATCGACAATCCATAAC
LOC_Os10g20810
Os.45976.1.S1_at--867--10111Chr10:10225591..10225615 (25 bp)
TATGACGGATCGACAATCCATAACG
LOC_Os10g20810
Os.45976.1.S1_at--497--671Chr10:10225592..10225616 (25 bp)
ATGACGGATCGACAATCCATAACGT
LOC_Os10g20810
Os.45976.1.S1_at--478--8932Chr10:10225593..10225617 (25 bp)
TGACGGATCGACAATCCATAACGTC
LOC_Os10g20810
Target Sequence 
GAAATGATCGACAAAGTCACTGTGTACGACTCAATGAATAAAGAGGAGAAGATTTTTGACAAGGTCTTCCAACTGATAGA
CAGGGCTTGGGATCGGTTCCGTCAATTGGTCCGCGGGACTTGGAAAGAAAAAATTGGACGGAGGTTTCATTTTCCATGTG
CAAAGCAGGACCAGGGAACTTACTTATGCGGCTACAACGTATGCGAGTATGCCCACTACCTATCAAACCAAATATGCACC
ACACGAGAGCTTGATCGTATTCACATGAGGGATAATCTCCCACACAAGGATTTTATCACGGCTGTTCAAGAACAACTGAT
GGGATTCATCAACGAAGAAGTCCTCAATCCTGATGGTGAATTCTACTATGACGGATCGACAATCCATAACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis