Browse Element(s) Details


OsAffx.18317.1.S1_x_at

Description tigr:9638.m01731
TID=OsAffx.18317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g208508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20794Os.46306.1.S1_x_at6/1110+10216234..10219535transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_x_at11/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_at9/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20820OsAffx.20481.1.S1_at11/1110+10230068..10230433hypothetical protein
LOC_Os10g20830Os.46837.1.S1_at11/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20830OsAffx.30467.1.S1_x_at1/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20840NANA10+10235110..10235523Cortical cell delineating protein precursor, putative
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative
LOC_Os10g20890Os.46579.1.S1_at11/1110+10255920..10256586Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20900OsAffx.15017.2.S1_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20900OsAffx.15017.2.S1_x_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_x_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20920OsAffx.8244.1.S1_at10/1110+10261647..10264181retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18317.1.S1_x_at--414--10291Chr10:10238556..10238577 (22 bp)
TTTCTGAGGTGGCTACTGGTGAAAT
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--944--10571Chr10:10238557..10238577 (21 bp)
TTCTGAGGTGGCTACTGGTGAAATC
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--307--9471Chr10:10238558..10238577 (20 bp)
TCTGAGGTGGCTACTGGTGAAATCG
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--21--6151NONE
GAGGTGGCTACTGGTGAAATCGGTC
NONE
OsAffx.18317.1.S1_x_at--981--411NONE
AGGTGGCTACTGGTGAAATCGGTCG
NONE
OsAffx.18317.1.S1_x_at--421--7731NONE
GGTGGCTACTGGTGAAATCGGTCGG
NONE
OsAffx.18317.1.S1_x_at--310--3051Chr10:10239509..10239533 (25 bp)
AATCGGTCGGATAGGTCTTGCCACA
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--932--10072Chr10:10239520..10239544 (25 bp)
TAGGTCTTGCCACACTTGTTGAGGA
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--836--671Chr10:10239544..10239568 (25 bp)
ATGAGTCCGAGATCAACTGGGAGGT
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--287--2571Chr10:10239558..10239582 (25 bp)
AACTGGGAGGTTGACCCTAATGCCA
LOC_Os10g20850
OsAffx.18317.1.S1_x_at--678--2071Chr10:10239586..10239610 (25 bp)
ACATTGGCCTTCACGGCGGTGCAAA
LOC_Os10g20850
Target Sequence 
TTTCTGAGGTGGCTACTGGTGAAATCGGTCGGATAGGTCTTGCCACACTTGTTGAGGATGAGTCCGAGATCAACTGGGAG
GTTGACCCTAATGCCAAGCACATTGGCCTTCACGGCGGTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18317.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis