Browse Element(s) Details


OsAffx.15017.2.S1_x_at

Description tigr:9638.m01736
TID=OsAffx.15017.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2090010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20830Os.46837.1.S1_at11/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20830OsAffx.30467.1.S1_x_at1/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20840NANA10+10235110..10235523Cortical cell delineating protein precursor, putative
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative
LOC_Os10g20890Os.46579.1.S1_at11/1110+10255920..10256586Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20900OsAffx.15017.2.S1_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20900OsAffx.15017.2.S1_x_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_x_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20920OsAffx.8244.1.S1_at10/1110+10261647..10264181retrotransposon protein, putative, unclassified
LOC_Os10g20930OsAffx.8243.1.S1_at11/1110+10265106..10268949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20940NANA10+10270713..10272248retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20950OsAffx.248.1.S1_x_at2/1110+10273101..10273409hypothetical protein
LOC_Os10g20960OsAffx.20488.2.S1_at11/1110+10274779..10282409retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15017.2.S1_x_at--662--5831Chr10:10257151..10257175 (25 bp)
GACCTCGGCAAGGAGAGAGACCTTG
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--490--8051Chr10:10257162..10257186 (25 bp)
GGAGAGAGACCTTGGCAACCGGCAA
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--680--6011Chr10:10257163..10257187 (25 bp)
GAGAGAGACCTTGGCAACCGGCAAC
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--595--5951Chr10:10257165..10257189 (25 bp)
GAGAGACCTTGGCAACCGGCAACAG
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--82--1391Chr10:10257168..10257192 (25 bp)
AGACCTTGGCAACCGGCAACAGCTA
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--896--3791Chr10:10257207..10257231 (25 bp)
CTCCGATGGCGACACATATTGCCAA
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--209--6231Chr10:10257211..10257235 (25 bp)
GATGGCGACACATATTGCCAACGAT
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--1032--8371Chr10:10257214..10257238 (25 bp)
GGCGACACATATTGCCAACGATGGC
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--180--2091Chr10:10257220..10257244 (25 bp)
ACATATTGCCAACGATGGCGGGACC
LOC_Os10g20900
OsAffx.15017.2.S1_x_at--316--1331NONE
AGAGGATAGAGGGTGTCATAGACAT
NONE
OsAffx.15017.2.S1_x_at--56--3351Chr10:10258034..10258058 (25 bp)
CACGGTTTTGTGGACTTTGCTCGAA
LOC_Os10g20900
Target Sequence 
GACCTCGGCAAGGAGAGAGACCTTGGCAACCGGCAACAGCTACCTCCACACCGCTCCTCCGATGGCGACACATATTGCCA
ACGATGGCGGGACCGGGGAGAGGATAGAGGGTGTCATAGACATAATGACGGAATCCTTATATGACAAGTGTGTTGATGAG
CACGGTTTTGTGGACTTTGCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15017.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis