Browse Element(s) Details


OsAffx.8244.1.S1_at

Description gb:NM_195933.1
DB_XREF= gi:37533225
TID=OsAffx.8244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative retroelement (OSJNAb0078C13.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2092010/11retrotransposon protein, putative, unclassified
LOC_Os04g092703/11retrotransposon protein, putative, unclassified
LOC_Os12g335601/11retrotransposon protein, putative, unclassified
LOC_Os03g238701/11retrotransposon protein, putative, unclassified
LOC_Os11g226901/11retrotransposon protein, putative, unclassified
LOC_Os09g147401/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g364701/11retrotransposon protein, putative, unclassified
LOC_Os03g238801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative
LOC_Os10g20890Os.46579.1.S1_at11/1110+10255920..10256586Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20900OsAffx.15017.2.S1_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20900OsAffx.15017.2.S1_x_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_x_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20920OsAffx.8244.1.S1_at10/1110+10261647..10264181retrotransposon protein, putative, unclassified
LOC_Os10g20930OsAffx.8243.1.S1_at11/1110+10265106..10268949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20940NANA10+10270713..10272248retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20950OsAffx.248.1.S1_x_at2/1110+10273101..10273409hypothetical protein
LOC_Os10g20960OsAffx.20488.2.S1_at11/1110+10274779..10282409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20970OsAffx.7362.1.S1_x_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20970Os.46314.3.S1_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8244.1.S1_at--653--5511Chr10:10262702..10262726 (25 bp)
GAAAATCCGGTCTGATGCTCAGCCA
LOC_Os10g20920
OsAffx.8244.1.S1_at--1120--9653Chr10:10262720..10262744 (25 bp)
TCAGCCAAGCATCTCAAAGCCAACT
LOC_Os10g20920
OsAffx.8244.1.S1_at--202--2371Chr10:10262735..10262759 (25 bp)
AAAGCCAACTAACCAGTCGGACTCT
LOC_Os10g20920
OsAffx.8244.1.S1_at--1032--6611Chr10:10262750..10262774 (25 bp)
GTCGGACTCTCGCAAAAGGAAATTA
LOC_Os10g20920
OsAffx.8244.1.S1_at--744--8191NONE
GGAAGTCATCCAGAATTCATCTTAG
NONE
OsAffx.8244.1.S1_at--1113--5972Chr10:10263731..10263755 (25 bp)
GAGAAACTGGTTCCTCACCATGGAA
LOC_Os10g20920
OsAffx.8244.1.S1_at--1154--5971Chr10:10263764..10263788 (25 bp)
GAGACAAGAGCCCAACTCCATGAAA
LOC_Os10g20920
OsAffx.8244.1.S1_at--413--691Chr10:10263816..10263840 (25 bp)
ATGATCTTAGGGACCGAATCGCCAA
LOC_Os10g20920
OsAffx.8244.1.S1_at--383--3052Chr10:10263832..10263856 (25 bp)
AATCGCCAAGCTCCAAGATTCCAAT
LOC_Os10g20920
OsAffx.8244.1.S1_at--1054--3215Chr11:12580636..12580660 (25 bp)
CAAGATTCCAATTTCGAGCTGAGTG
LOC_Os11g22690
OsAffx.8244.1.S1_at--554--3112Chr10:10264017..10264041 (25 bp)
AATTGACCAAACAGAGGGACTCGGC
LOC_Os10g20920
Target Sequence 
GAAAATCCGGTCTGATGCTCAGCCAAGCATCTCAAAGCCAACTAACCAGTCGGACTCTCGCAAAAGGAAATTAATTCTGA
GTGACGACGAGGGTGACAATGTTGAAAAAGCTGGCAACAAAGAGGTGACTGGAAAACAGCCAAGGCAAGCTAACCCGAAG
AAGAAAACATCCAGTCGTCCAATACCAAAAATCAGGAAGTCATCCAGAATTCATCTTAGGAATGAAGCAAAAACTGCAAC
CCTCGAGAAACTGGTTCCTCACCATGGAACCCTGGAAGAGACAAGAGCCCAACTCCATGAAACCAGGGAGCTTGCCAGGA
AAACTGAACATGATCTTAGGGACCGAATCGCCAAGCTCCAAGATTCCAATTTCGAGCTGAGTGGTTCATCCAAAGTGCAA
GTTGCCAAGATCACCGAGCTAGAAAAGCGAATCAAAGCTCTGGAAAAAGACAAGGGTGAATTGACCAAACAGAGGGACTC
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis