Browse Element(s) Details


OsAffx.18318.1.S1_at

Description tigr:9638.m01734
TID=OsAffx.18318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g208809/11Cortical cell delineating protein precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20810Os.45976.1.S1_x_at11/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_at9/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20820OsAffx.20481.1.S1_at11/1110+10230068..10230433hypothetical protein
LOC_Os10g20830Os.46837.1.S1_at11/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20830OsAffx.30467.1.S1_x_at1/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20840NANA10+10235110..10235523Cortical cell delineating protein precursor, putative
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative
LOC_Os10g20890Os.46579.1.S1_at11/1110+10255920..10256586Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20900OsAffx.15017.2.S1_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20900OsAffx.15017.2.S1_x_at10/1110+10257119..10258129hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_x_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20910OsAffx.30469.1.S1_at11/1110+10259765..10260032hypothetical protein
LOC_Os10g20920OsAffx.8244.1.S1_at10/1110+10261647..10264181retrotransposon protein, putative, unclassified
LOC_Os10g20930OsAffx.8243.1.S1_at11/1110+10265106..10268949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20940NANA10+10270713..10272248retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18318.1.S1_at--248--9271Chr10:10247511..10247535 (25 bp)
TCCTCCTTGCTGTCATAGCTAACGG
LOC_Os10g20880
OsAffx.18318.1.S1_at--407--8731Chr10:10247501..10247525 (25 bp)
TGTCATAGCTAACGGTTGCACACCC
LOC_Os10g20880
OsAffx.18318.1.S1_at--255--4091Chr10:10247451..10247475 (25 bp)
CGACGCCCACGCATCATGGCAAGAA
LOC_Os10g20880
OsAffx.18318.1.S1_at--327--4971Chr10:10247441..10247465 (25 bp)
GCATCATGGCAAGAACGGTGGGCAT
LOC_Os10g20880
OsAffx.18318.1.S1_at--35--10711Chr10:10247411..10247435 (25 bp)
TTGCCCGATGGACGCTTTGAAGCTG
LOC_Os10g20880
OsAffx.18318.1.S1_at--1078--4471NONE
GCCGTGAAGGCCAACTTTTTAGCTG
NONE
OsAffx.18318.1.S1_at--226--4391NONE
GCCAACTTTTTAGCTGGCAGGGCTA
NONE
OsAffx.18318.1.S1_at--547--8271Chr10:10246509..10246533 (25 bp)
GGCAGGGCTAATCCAGTTACTGGTA
LOC_Os10g20880
OsAffx.18318.1.S1_at--983--9891Chr10:10246492..10246516 (25 bp)
TACTGGTACTGGGAGAAAAGACGAT
LOC_Os10g20880
OsAffx.18318.1.S1_at--591--731Chr10:10246469..10246493 (25 bp)
ATGTTGAAATTCTACGAGGTGACCG
LOC_Os10g20880
OsAffx.18318.1.S1_at--1069--3131Chr10:10246462..10246486 (25 bp)
AATTCTACGAGGTGACCGATCGAAT
LOC_Os10g20880
Target Sequence 
TCCTCCTTGCTGTCATAGCTAACGGTTGCACACCCAACTGCCCCGGCGAGCAGGTTGTCCCGACGCCCACGCATCATGGC
AAGAACGGTGGGCATGGCCGTTGCCCGATGGACGCTTTGAAGCTGAGAGTGTGCGCCAACGTGCTCAAGGGGCTGGTCGA
TGTGGAGATCGGGCACGGCCCCGACGACTGCTGCTCGCTGCTATCAGGGATCGCCGATATCGACGCTGCCGTCTGCCTCT
GCACCGCCGTGAAGGCCAACTTTTTAGCTGGCAGGGCTAATCCAGTTACTGGTACTGGGAGAAAAGACGATGTTGAAATT
CTACGAGGTGACCGATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis