Browse Element(s) Details


Os.45976.1.S1_x_at

Description gb:NM_195924.1
DB_XREF= gi:37533207
TID=Os.45976.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0078C13.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0078C13.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2081011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g425406/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g260805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g204105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g079805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g432805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g041404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g037704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g235304/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g254024/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g037104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g207904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g094204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g283704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g078404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g115804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g263703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g430203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g113803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g380623/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g076803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g264203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g054103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g116403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g271803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g145603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g131103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g109703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g113303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g083703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g719103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g184903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g060303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g057203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g345903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g199603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g058803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g410503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g357623/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g168902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g058602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g093202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g406602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g067002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g273602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g376202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g116902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g116002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g287702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g330302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g262242/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g035302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g059802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g125702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g121002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g019842/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g020102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g411902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g112102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g090602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g286502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g236302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g171902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g429802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g044202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g403802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g303102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g362801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g190001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g042001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g255901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g054201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g178501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g088501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g298201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g219601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g182001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g243001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g192201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g225701/11retrotransposon protein, putative, unclassified
LOC_Os07g251601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g061001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g283701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g118501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g114101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g195901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g036701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g474431/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g158501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g293601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g102201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g081101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g134301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20770Os.46863.1.S1_at11/1110+10199273..10201900expressed protein
LOC_Os10g20770Os.50862.1.S1_x_at1/1110+10199273..10201900expressed protein
LOC_Os10g20780OsAffx.14826.2.S1_at1/1110+10210730..10211782Transposable element protein, putative, Retrotrans_gag
LOC_Os10g20794Os.46306.1.S1_x_at6/1110+10216234..10219535transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_x_at11/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20810Os.45976.1.S1_at9/1110+10222712..10225659transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20820OsAffx.20481.1.S1_at11/1110+10230068..10230433hypothetical protein
LOC_Os10g20830Os.46837.1.S1_at11/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20830OsAffx.30467.1.S1_x_at1/1110+10231745..10232463Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g20840NANA10+10235110..10235523Cortical cell delineating protein precursor, putative
LOC_Os10g20850OsAffx.18317.1.S1_s_at11/1110+10238525..10239644hypothetical protein
LOC_Os10g20850OsAffx.18317.1.S1_x_at8/1110+10238525..10239644hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_x_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20860OsAffx.30467.1.S1_at11/1110+10242298..10242552hypothetical protein
LOC_Os10g20870OsAffx.30468.1.S1_at10/1110+10243622..10244162hypothetical protein
LOC_Os10g20880OsAffx.18318.1.S1_at9/1110+10246432..10247578Cortical cell delineating protein precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45976.1.S1_x_at--1146--18961Chr12:6309572..6309596 (25 bp)
ACGTCTCTCTTCTGAGCGCATGGAT
LOC_Os12g11640
Os.45976.1.S1_x_at--208--88533Chr12:1535720..1535962 (25 bp)
TGATCGACAAAGTCACTGTGTACGA
LOC_Os12g03770
Os.45976.1.S1_x_at--1084--102342Chr12:6149083..6149107 (25 bp)
TTTGACAAGGTCTTCCAACTGATAG
LOC_Os12g11380
Os.45976.1.S1_x_at--847--32355Chr12:6310048..6310172 (25 bp)
CAACTGATAGACAGGGCTTGGGATC
LOC_Os12g11640
Os.45976.1.S1_x_at--209--3471Chr10:10225297..10225321 (25 bp)
CAGGGAACTTACTTATGCGGCTACA
LOC_Os10g20810
Os.45976.1.S1_x_at--16--10431Chr10:10225309..10225333 (25 bp)
TTATGCGGCTACAACGTATGCGAGT
LOC_Os10g20810
Os.45976.1.S1_x_at--953--2355Chr11:14421053..14421077 (25 bp)
AAACCAAATATGCACCACACGAGAG
LOC_Os11g26080
Os.45976.1.S1_x_at--393--6013Chr10:10225370..10225493 (25 bp)
GAGAGCTTGATCGTATTCACATGAG
LOC_Os10g20810
Os.45976.1.S1_x_at--68--43757Chr12:6310552..6310576 (25 bp)
CCACACAAGGATTTTATCACGGCTG
LOC_Os12g11640
Os.45976.1.S1_x_at--600--3193Chr10:10225569..10225593 (25 bp)
CAATCCTGATGGTGAATTCTACTAT
LOC_Os10g20810
Os.45976.1.S1_x_at--498--671Chr10:10225592..10225616 (25 bp)
ATGACGGATCGACAATCCATAACGT
LOC_Os10g20810
Target Sequence 
ACGTCTCTCTTCTGAGCGCATGGATTTTAATGGAGATTCACAGGGCCCGATGGCGGGGGTTTTACGATACTGGGTTCATC
GACCCTCGGAAAATCAACACCGAAATGATCGACAAAGTCACTGTGTACGACTCAATGAATAAAGAGGAGAAGATTTTTGA
CAAGGTCTTCCAACTGATAGACAGGGCTTGGGATCGGTTCCGTCAATTGGTCCGCGGGACTTGGAAAGAAAAAATTGGAC
GGAGGTTTCATTTTCCATGTGCAAAGCAGGACCAGGGAACTTACTTATGCGGCTACAACGTATGCGAGTATGCCCACTAC
CTATCAAACCAAATATGCACCACACGAGAGCTTGATCGTATTCACATGAGGGATAATCTCCCACACAAGGATTTTATCAC
GGCTGTTCAAGAACAACTGATGGGATTCATCAACGAAGAAGTCCTCAATCCTGATGGTGAATTCTACTATGACGGATCGA
CAATCCATAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45976.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis