Browse Element(s) Details


Os.46306.1.S1_x_at

Description gb:NM_195013.1
DB_XREF= gi:37531385
TID=Os.46306.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46306 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBb0015J03.19), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g207908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g034278/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g092308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g041808/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g035208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g200908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g114208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g083508/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g455198/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g411808/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g033378/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g404108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g298507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g158707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g286506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g041506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g362806/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g207946/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g224306/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g204306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g280606/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g088306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g199606/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g236206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g093006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g407006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g346006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g283706/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g219805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g078405/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g263705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g254024/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g079904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g033404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g167604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g432904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g113404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g060404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g146403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g380703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g081003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g344403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g287803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g036803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g330002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g020302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g145602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g357562/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g091602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g097902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g185002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g019842/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g232102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g456402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g081502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g251002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g180422/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g109902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g195602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g235202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g044302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g442402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g060002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g362802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g066302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g170402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g112102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g186402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g211602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g253802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g168802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g168242/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g454802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g256402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g252101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g037001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g086801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g293701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g227941/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g196001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g067101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g228501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g194301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g260901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g178401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g169401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20760OsAffx.10155.1.S1_at1/114+11622225..11623697retrotransposon protein, putative, unclassified
LOC_Os04g20774Os.53576.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.13896.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.32196.1.S1_x_at2/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein
LOC_Os04g20820OsAffx.3840.1.S1_at11/114+11664285..11664729hypothetical protein
LOC_Os04g20830OsAffx.13898.1.S1_at11/114+11665758..11667828hypothetical protein
LOC_Os04g20840NANA4+11670512..11673089Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46306.1.S1_x_at--767--34136Chr12:4129012..4129036 (25 bp)
CAGAACAGTGCTGTTCGTATCGATG
LOC_Os12g08100
Os.46306.1.S1_x_at--1127--14135Chr12:4129013..4129037 (25 bp)
AGAACAGTGCTGTTCGTATCGATGC
LOC_Os12g08100
Os.46306.1.S1_x_at--677--40959Chr12:6039203..6039227 (25 bp)
CGAAGCGCCACGTGGTTCTCCCAGG
LOC_Os12g11210
Os.46306.1.S1_x_at--881--54173Chr12:6039204..6039227 (24 bp)
GAAGCGCCACGTGGTTCTCCCAGGA
LOC_Os12g11210
Os.46306.1.S1_x_at--564--26737Chr12:8369885..8369905 (21 bp)
AAGCGCCACGTGGTTCTCCCAGGAA
LOC_Os12g14640
Os.46306.1.S1_x_at--73--16737Chr12:8369886..8369905 (20 bp)
AGCGCCACGTGGTTCTCCCAGGAAA
LOC_Os12g14640
Os.46306.1.S1_x_at--1053--45533Chr10:13351231..13351255 (25 bp)
GCGCCACGTGGTTCTCCCAGGAAAA
LOC_Os10g26370
Os.46306.1.S1_x_at--62--44134Chr11:9968730..9968753 (24 bp)
GCCACGTGGTTCTCCCAGGAAAAAG
LOC_Os11g17840
Target Sequence 
CAGAACAGTGCTGTTCGTATCGATGCNATGGGACACGATGGTACAACTGGCACGTATTACGGTGCCATCGAGGACATATG
GGAACTTGACTATGGACCTCTCAAGGTCCCTCTGTTCCGGTGCCAATGGGTTAGGTTGACTGGTGGAGGCGTAACGATTG
ATGACAGTGGGATGACAACGGTTGACCTTAACAAGGTTGGATACTCGGACGAACCTTTTGTCCTTGCCAATGATGTAACG
CAAGTTTTTTACGTCAAGGACATGTCTAGCAAAGGAAGAAAGGGCAAAGGGCCTGACGAGCCGAAGCGCCACGTGGTTCT
CCCAGGAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46306.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis