Browse Element(s) Details


OsAffx.3840.1.S1_at

Description tigr:9632.m01908
TID=OsAffx.3840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein
LOC_Os04g20820OsAffx.3840.1.S1_at11/114+11664285..11664729hypothetical protein
LOC_Os04g20830OsAffx.13898.1.S1_at11/114+11665758..11667828hypothetical protein
LOC_Os04g20840NANA4+11670512..11673089Zinc knuckle family protein
LOC_Os04g20850Os.45173.1.S1_x_at1/114+11676162..11682796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g20860OsAffx.8338.1.S1_x_at3/114+11684030..11687706retrotransposon protein, putative, unclassified
LOC_Os04g20860OsAffx.10020.1.S1_x_at2/114+11684030..11687706retrotransposon protein, putative, unclassified
LOC_Os04g20860OsAffx.9790.1.S1_x_at1/114+11684030..11687706retrotransposon protein, putative, unclassified
LOC_Os04g20870NANA4+11689245..11690726hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3840.1.S1_at--150--1951Chr04:11664334..11664358 (25 bp)
ACGGCGCAGCATCTGGCGGTGGTAG
LOC_Os04g20820
OsAffx.3840.1.S1_at--752--7731Chr04:11664351..11664375 (25 bp)
GGTGGTAGAGGCGAGCTGCTCCAGA
LOC_Os04g20820
OsAffx.3840.1.S1_at--720--1591Chr04:11664364..11664388 (25 bp)
AGCTGCTCCAGACGGCGGTAGCCGA
LOC_Os04g20820
OsAffx.3840.1.S1_at--1126--5091Chr04:11664457..11664481 (25 bp)
GCACGGCATCCAGCAATGGAAGGAT
LOC_Os04g20820
OsAffx.3840.1.S1_at--199--1491Chr04:11664468..11664492 (25 bp)
AGCAATGGAAGGATCGTGCGGCACT
LOC_Os04g20820
OsAffx.3840.1.S1_at--910--491Chr04:11664480..11664504 (25 bp)
ATCGTGCGGCACTGGTGGCCTCCAT
LOC_Os04g20820
OsAffx.3840.1.S1_at--1081--611Chr04:11664511..11664535 (25 bp)
ATGCTACCCTCGTGGCGTCGGCTGG
LOC_Os04g20820
OsAffx.3840.1.S1_at--522--951Chr04:11664552..11664576 (25 bp)
AGGACGGTCGGATCTGGCTCCTCTA
LOC_Os04g20820
OsAffx.3840.1.S1_at--151--1931Chr04:11664555..11664579 (25 bp)
ACGGTCGGATCTGGCTCCTCTAGGT
LOC_Os04g20820
OsAffx.3840.1.S1_at--81--7811Chr04:11664557..11664581 (25 bp)
GGTCGGATCTGGCTCCTCTAGGTCC
LOC_Os04g20820
OsAffx.3840.1.S1_at--943--3431Chr04:11664581..11664605 (25 bp)
CAGATCTGGCGCATCCTTAGTCGGG
LOC_Os04g20820
Target Sequence 
ACGGCGCAGCATCTGGCGGTGGTAGAGGCGAGCTGCTCCAGACGGCGGTAGCCGATGGTGGCGGGGATGGTGATGGCAGC
AGGGACGGCGATGGCGGTGGCGTTGTTCGCGGATCCGGCGACAGCACGGCATCCAGCAATGGAAGGATCGTGCGGCACTG
GTGGCCTCCATCGCCCGATGCTACCCTCGTGGCGTCGGCTGGCGACGATGGTGCAAGGAGGACGGTCGGATCTGGCTCCT
CTAGGTCCAGATCTGGCGCATCCTTAGTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis