Browse Element(s) Details


OsAffx.9790.1.S1_x_at

Description gb:NM_189142.1
DB_XREF= gi:34905367
GEN=OJ1126_G08.13
TID=OsAffx.9790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.13 (OJ1126_G08.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g222492/11Peroxidase family protein, expressed
LOC_Os07g183902/11retrotransposon protein, putative, unclassified
LOC_Os04g225201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g213401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g147001/11hypothetical protein
LOC_Os04g075301/11hypothetical protein
LOC_Os06g246401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g208601/11retrotransposon protein, putative, unclassified
LOC_Os07g221601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g113501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g318901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g457001/11retrotransposon protein, putative, unclassified
LOC_Os08g302201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g455601/11retrotransposon protein, putative, unclassified
LOC_Os02g217401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g285901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22200Os.14491.2.S1_x_at4/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.47463.1.S1_x_at3/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.41934.1.A1_x_at2/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22209OsAffx.23333.1.S1_at11/111+12470043..12472887hypothetical protein
LOC_Os01g22209OsAffx.23333.2.S1_x_at10/111+12470043..12472887hypothetical protein
LOC_Os01g22220OsAffx.23332.2.A1_at11/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.25889.2.S1_at10/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.1923.1.S1_at1/111+12474474..12477137hypothetical protein
LOC_Os01g22230Os.35123.1.S1_at11/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22230Os.1559.1.S1_x_at2/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22249Os.17722.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.51434.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.38751.1.A1_at4/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_x_at3/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.1559.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.9790.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.1197.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.49802.1.S2_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.916.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22270Os.46012.2.S1_x_at8/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.27088.1.A1_x_at5/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.46012.3.S1_x_at4/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22280NANA1+12511354..12513402retrotransposon protein, putative, unclassified
LOC_Os01g22289NANA1+12516600..12516863hypothetical protein
LOC_Os01g22300NANA1+12519025..12520374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22309NANA1+12523828..12524091hypothetical protein
LOC_Os01g22320Os.45902.1.A1_x_at4/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22320Os.56372.1.S1_at1/111+12525855..12527244transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9790.1.S1_x_at--1019--81331Chr12:6528767..6528787 (21 bp)
GGAAACGGCGGCAACCTTCGGCTTG
NONE
OsAffx.9790.1.S1_x_at--638--5537Chr12:6528768..6528787 (20 bp)
GAAACGGCGGCAACCTTCGGCTTGA
NONE
OsAffx.9790.1.S1_x_at--351--24314Chr08:11112934..11113002 (25 bp)
AACGGCGGCAACCTTCGGCTTGACG
NONE
OsAffx.9790.1.S1_x_at--81--81971Chr12:10258588..10258911 (25 bp)
GGCAACCTTCGGCTTGACGACGACG
NONE
OsAffx.9790.1.S1_x_at--175--175163Chr12:7861311..7861335 (25 bp)
ACCTTCGGCTTGACGACGACGGCGG
NONE
OsAffx.9790.1.S1_x_at--863--3971Chr01:17417391..17417415 (25 bp)
CGGTGCTCTGGCGATCTACGGCGAC
NONE
OsAffx.9790.1.S1_x_at--194--7311Chr01:17417393..17417417 (25 bp)
GTGCTCTGGCGATCTACGGCGACGG
NONE
OsAffx.9790.1.S1_x_at--992--9452Chr02:8106841..8107260 (25 bp)
TCTGGCGATCTACGGCGACGGCGGA
LOC_Os02g14700
OsAffx.9790.1.S1_x_at--704--4912Chr11:21439470..21439489 (20 bp)
ATCGGCGACGGCTTGGTGACCACGA
NONE
OsAffx.9790.1.S1_x_at--871--4937Chr09:8392196..8392216 (21 bp)
GCTTGGTGACCACGACGGCGACCTC
NONE
OsAffx.9790.1.S1_x_at--485--1512Chr10:3313364..3313642 (25 bp)
AGCAGCGACGACGACTGGACCGACG
NONE
Target Sequence 
GGAAACGGCGGCAACCTTCGGCTTGACGACGACGGCGGTGCTCTGGCGATCTACGGCGACGGCGGAGGGGTGGACGAGAT
CGGCGACGGCTTGGTGACCACGACGGCGACCTCCCCGAGCAGCGACGACGACTGGACCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9790.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis