Browse Element(s) Details


Os.1559.1.S1_x_at

Description gb:NM_183815.1
DB_XREF= gi:34894757
GEN=B1135C02.9
TID=Os.1559.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1559 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peroxidase (B1135C02.9), mRNA.
PROD=putative peroxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g223368/11Peroxidase family protein, expressed
LOC_Os01g223522/11Peroxidase family protein, expressed
LOC_Os01g222302/11Peroxidase family protein, expressed
LOC_Os01g222492/11Peroxidase family protein, expressed
LOC_Os01g223701/11Peroxidase family protein, expressed
LOC_Os09g043391/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22270Os.46012.2.S1_x_at8/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.27088.1.A1_x_at5/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.46012.3.S1_x_at4/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22280NANA1+12511354..12513402retrotransposon protein, putative, unclassified
LOC_Os01g22289NANA1+12516600..12516863hypothetical protein
LOC_Os01g22300NANA1+12519025..12520374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22309NANA1+12523828..12524091hypothetical protein
LOC_Os01g22320Os.45902.1.A1_x_at4/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22320Os.56372.1.S1_at1/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22336Os.1559.1.S1_x_at8/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22336Os.41248.4.S1_x_at3/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22352Os.20260.1.S1_at11/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352Os.1559.1.S1_x_at2/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.6795.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.15945.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22370Os.1563.1.S1_at11/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22370Os.1559.1.S1_x_at1/111+12560670..12564737Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009624biological_processresponse to nematode
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1559.1.S1_x_at--963--8374Chr01:12551843..12551867 (25 bp)
GGCGACGCTGGACAACAACTACTAC
LOC_Os01g22352
Os.1559.1.S1_x_at--359--2653Chr01:12539237..12539261 (25 bp)
AACCAGCTGCGGGTGAACGCGACGC
LOC_Os01g22336
Os.1559.1.S1_x_at--618--1551Chr01:12539279..12539303 (25 bp)
AGCTTCGCGGCGAACGAGACGCTGT
LOC_Os01g22336
Os.1559.1.S1_x_at--1048--8193Chr01:12551974..12551998 (25 bp)
GGAAGGAGAAGTTCGTCGCCGCCAT
LOC_Os01g22352
Os.1559.1.S1_x_at--868--3372Chr01:12539362..12539386 (25 bp)
CAGCCAGGGCGAGGTCAGGCTCAAC
LOC_Os01g22336
Os.1559.1.S1_x_at--1063--9011Chr01:12539387..12539411 (25 bp)
TGCAGCGTCGTCAACAACCGGTCAT
LOC_Os01g22336
Os.1559.1.S1_x_at--1053--6231Chr01:12539428..12539452 (25 bp)
GATGGAGACGTCGTACCACTACTAC
LOC_Os01g22336
Os.1559.1.S1_x_at--54--6371Chr01:12539457..12539481 (25 bp)
GATCCACCATGTCCGTCGACGAGGT
LOC_Os01g22336
Os.1559.1.S1_x_at--415--511Chr01:12539494..12539518 (25 bp)
ATCGACGACGATGTACAACCTGTTT
NONE
Os.1559.1.S1_x_at--658--791Chr01:12539532..12539556 (25 bp)
ATGTGTGTATCCCACGAGGTCACGA
NONE
Os.1559.1.S1_x_at--718--7091Chr01:12539550..12539574 (25 bp)
GTCACGACGATGTAGAAGCCGGGAA
NONE
Target Sequence 
GGCGACGCTGGACAACAACTACTACAAGCTGCTGCCGCTCAACCTGGGGCTCTTCTTCTCCGACAACCAGCTGCGGGTGA
ACGCGACGCTGGGCGCGTCGGTGAGCAGCTTCGCGGCGAACGAGACGCTGTGGAAGGAGAAGTTCGTCGCCGCCATGGTC
AAGATGGGGAGCATCGAGGTGCTCACCGGCAGCCAGGGCGAGGTCAGGCTCAACTGCAGCGTCGTCAACAACCGGTCATC
CTCCTCCGCCGCCGGGATGGAGACGTCGTACCACTACTACTCCGGATCCACCATGTCCGTCGACGAGGTCGCGTCGAGCT
GATCGACGACGATGTACAACCTGTTTGGTGTTAATTAGGATGTGTGTATCCCACGAGGTCACGACGATGTAGAAGCCGGG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1559.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis