Browse Element(s) Details


OsAffx.6795.1.S1_at

Description tigr:9638.m02410
TID=OsAffx.6795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2843011/11hypothetical protein
LOC_Os01g223521/11Peroxidase family protein, expressed
LOC_Os01g480301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6795.1.S1_at--793--4211Chr10:14461145..14461169 (25 bp)
CCGCCCAAAATCTAGGGTTTATGAT
LOC_Os10g28430
OsAffx.6795.1.S1_at--191--7971Chr10:14461118..14461142 (25 bp)
GGATCGATTAACTACAAGAGTCCTC
LOC_Os10g28430
OsAffx.6795.1.S1_at--937--2771Chr10:14461103..14461127 (25 bp)
AAGAGTCCTCGAGGCTGGTTTGAAC
LOC_Os10g28430
OsAffx.6795.1.S1_at--1138--8331Chr10:14461091..14461115 (25 bp)
GGCTGGTTTGAACCGGACCCATTCA
LOC_Os10g28430
OsAffx.6795.1.S1_at--564--5811Chr10:14460969..14461100 (25 bp)
GACCCATTCAGTGCCCTATAGCAGA
LOC_Os10g28430
OsAffx.6795.1.S1_at--823--7292Chr10:14460959..14460983 (25 bp)
GTGCCCTATAGCAGATACGCGTTTT
LOC_Os10g28430
OsAffx.6795.1.S1_at--34--311Chr10:14460945..14460969 (25 bp)
ATACGCGTTTTTGCATTGTCCACTA
LOC_Os10g28430
OsAffx.6795.1.S1_at--768--4631Chr10:14460941..14460965 (25 bp)
GCGTTTTTGCATTGTCCACTAAGGG
LOC_Os10g28430
OsAffx.6795.1.S1_at--778--3078Chr10:15929495..15929514 (20 bp)
AATAGGGAATATTCCCTCAAGATGC
NONE
OsAffx.6795.1.S1_at--1124--6110Chr11:19026163..19026182 (20 bp)
ATGCTGGATGAGTGCATCCGACCGA
NONE
OsAffx.6795.1.S1_at--240--8894Chr01:34042858..34042882 (25 bp)
TGAGTGCATCCGACCGATTTGGCTG
NONE
Target Sequence 
CCGCCCAAAATCTAGGGTTTATGATGGGGATCGATTAACTACAAGAGTCCTCGAGGCTGGTTTGAACCGGACCCATTCAG
TGCCCTATAGCAGATACGCGTTTTTGCATTGTCCACTAAGGGGCAGTGTGGATGGGGCGGCCTGGAATAGGGAATATTCC
CTCAAGATGCTGGATGAGTGCATCCGACCGATTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis