Browse Element(s) Details


Os.37540.2.S1_at

Description gb:CF279930
DB_XREF= gi:33657316
DB_XREF=14ETL--06-G17.b1
CLONE=14ETL--06-G17
TID=Os.37540.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0053G13.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2841010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37540.2.S1_at--1006--2992Chr10:14447660..14447684 (25 bp)
AATGAGCTACAAAACCTAGACAAGG
LOC_Os10g28410
Os.37540.2.S1_at--515--4391Chr10:14447531..14447555 (25 bp)
GCCAATATGTTACAGTGCCCAGAAT
LOC_Os10g28410
Os.37540.2.S1_at--787--7291Chr10:14447517..14447541 (25 bp)
GTGCCCAGAATTCAAGCATCTAAAT
LOC_Os10g28410
Os.37540.2.S1_at--451--451Chr10:14447500..14447524 (25 bp)
ATCTAAATTCTGGTGATGGGCAGGG
LOC_Os10g28410
Os.37540.2.S1_at--145--5511Chr10:14447475..14447499 (25 bp)
GAACACAGATGAGTCTTGCAGCCTT
LOC_Os10g28410
Os.37540.2.S1_at--88--6311Chr10:14447468..14447492 (25 bp)
GATGAGTCTTGCAGCCTTGAGCAAA
LOC_Os10g28410
Os.37540.2.S1_at--530--3611Chr10:14447453..14447477 (25 bp)
CTTGAGCAAAGTGGCGTCTACCGTA
LOC_Os10g28410
Os.37540.2.S1_at--306--2311Chr10:14447446..14447470 (25 bp)
AAAGTGGCGTCTACCGTAGGACTGC
LOC_Os10g28410
Os.37540.2.S1_at--44--6931Chr10:14447095..14447119 (25 bp)
GTAGGAATTCAATGGCATATGGCAT
LOC_Os10g28410
Os.37540.2.S1_at--114--8291Chr10:14447075..14447099 (25 bp)
GGCATTGTACTATTGTGTTTTTTCA
LOC_Os10g28410
Os.37540.2.S1_at--378--10531Chr10:14447010..14447034 (25 bp)
TTCAGTTTTAACTGCTCATCCTATA
NONE
Target Sequence 
AATGAGCTACAAAACCTAGACAAGGNNNCANNNNNNNNNNNNNNNNCGCCAATATGTTACAGTGCCCAGAATTCAAGCAT
CTAAATTCTGGTGATGGGCAGGGGAACACAGATGAGTCTTGCAGCCTTGAGCAAAGTGGCGTCTACCGTAGGACTGCGAG
GAGAGTCTCGCTAACGTGTCGGCTGGTGTTGAAAGTTCACAAGAAGCTGTTCAAAATGTAGTCTATTCCTGTTGGTTGGG
TTAACAAGAAACAGTGTAGAGTATATTCTAAGNGTAACCTGTGACATTATGCTGGTACCGAAGACTACTGACTGGTGTAC
AAGGCCTTGATCTGCAAGCTGGAACAGCATGATTTGTNTAAATTCTGAAAGAAAGAAAAAACTGTAGTTGTTTGGACTAA
TGGGCAATATGCTGCTGCATGGAAGAGGGCCCTGACTCCTCAATAGTGTTTAGTTTTGAGACATTACTGTGCTTTTAATG
CCCGTAGGAATTCAATGGCATATGGCATTGTACTATTGTGTTTTTTCAGTTTTAACTGCTCATCCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37540.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis