Browse Element(s) Details


Os.4766.1.S1_at

Description gb:AK103834.1
DB_XREF= gi:32989043
TID=Os.4766.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein ID1 (OSJNBa0006I13.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148E16, full insert sequence.
FL= gb:AK103834.1 gb:AF050200.1 gb:AK102331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2835010/111,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4766.1.S1_at--1059--7451Chr10:14423695..14423719 (25 bp)
GTGTGCCCAGAGAAGCTGCCAAATT
LOC_Os10g28350
Os.4766.1.S1_at--794--4991Chr10:14423422..14423446 (25 bp)
GCATGATTGTTCTGCCTGCAGGGAT
LOC_Os10g28350
Os.4766.1.S1_at--862--711Chr10:14423399..14423423 (25 bp)
ATGTACCACCGCTTTACGTTGGACA
LOC_Os10g28350
Os.4766.1.S1_at--84--8151NONE
GGACACCGACAACTATATCAAGGCA
NONE
Os.4766.1.S1_at--118--3031Chr10:14423012..14423036 (25 bp)
AATGCGACTGTTTGTTGGCGATCCT
LOC_Os10g28350
Os.4766.1.S1_at--495--10871Chr10:14422998..14423022 (25 bp)
TTGGCGATCCTGTTTGGACACCCTA
LOC_Os10g28350
Os.4766.1.S1_at--969--6811Chr10:14422836..14422860 (25 bp)
GTTTTTGGCTAAACTTCTCAAGTCA
LOC_Os10g28350
Os.4766.1.S1_at--188--8891Chr10:14422781..14422805 (25 bp)
TGAGGGTTTTGTTGGGCTCCTGCAC
LOC_Os10g28350
Os.4766.1.S1_at--576--9271Chr10:14422764..14422788 (25 bp)
TCCTGCACTGCGGTTCTATATTCAA
LOC_Os10g28350
Os.4766.1.S1_at--1072--7231Chr10:14422691..14422715 (25 bp)
GTCGCCACTCACCAACTTGAAGTGA
LOC_Os10g28350
Os.4766.1.S1_at--854--6891Chr10:14422637..14422661 (25 bp)
GTATCAATCGGCATATAGCATTTCC
LOC_Os10g28350
Target Sequence 
GTGTGCCCAGAGAAGCTGCCAAATTATGAAACTAAGATCAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAAT
ACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAATGATCAGTGGATTCGTATAGCACTGAAGAAAG
GAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTG
TTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACT
TCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTC
AACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGAT
TTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis