Browse Element(s) Details


Os.37540.1.S1_x_at

Description gb:AK106414.1
DB_XREF= gi:32991623
TID=Os.37540.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0053G13.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A04, full insert sequence.
FL= gb:AK106414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37540.1.S1_x_at--793--10171Chr10:14447994..14448018 (25 bp)
TATAATTTCTCTTGCTTCACCGGTT
LOC_Os10g28410
Os.37540.1.S1_x_at--868--7911Chr10:14447973..14447997 (25 bp)
GGTTGTGATTGACTTTACCCCTCAT
LOC_Os10g28410
Os.37540.1.S1_x_at--942--6151Chr10:14447933..14447957 (25 bp)
GAGGACTTTACAGATCCCCAAAATG
LOC_Os10g28410
Os.37540.1.S1_x_at--612--5131Chr10:14447846..14447870 (25 bp)
GCAAATGAAACTGACCCTGCTTCTT
LOC_Os10g28410
Os.37540.1.S1_x_at--35--1351Chr10:14447417..14447441 (25 bp)
AGAGTCTCGCTAACGTGTCGGCTGG
LOC_Os10g28410
Os.37540.1.S1_x_at--468--2971Chr10:14447364..14447388 (25 bp)
AATGTAGTCTATTCCTGTTGGTTGG
LOC_Os10g28410
Os.37540.1.S1_x_at--479--611Chr10:14447290..14447314 (25 bp)
ATGCTGGTACCGAAGACTACTGACT
LOC_Os10g28410
Os.37540.1.S1_x_at--960--9911Chr10:14447273..14447297 (25 bp)
TACTGACTGGTGTACAAGGCCTTGA
LOC_Os10g28410
Os.37540.1.S1_x_at--972--9111Chr10:14447166..14447190 (25 bp)
TGCTGCATGGAAGAGGGCCCTGACT
LOC_Os10g28410
Os.37540.1.S1_x_at--674--4531Chr10:14447150..14447174 (25 bp)
GCCCTGACTCCTCAATAGTGTTTAG
LOC_Os10g28410
Os.37540.1.S1_x_at--493--1951Chr10:14447113..14447137 (25 bp)
ACTGTGCTTTTAATGCCCGTAGGAA
LOC_Os10g28410
Target Sequence 
TATAATTTCTCTTGCTTCACCGGTTGTGATTGACTTTACCCCTCATCAAAGGCTTAAAGGGGAGGACTTTACAGATCCCC
AAAATGCACACTCTGGAGAGTCGCAGGCAACTACAACAGAGAGCAATGGTTCCCATAATCTTGAAGGTGCAAATGAAACT
GACCCTGCTTCTTCATCACTTCTTCTGATGCCGTGCAGCCTGCTGATATTCAAAGATCAGGCTTATACAGACTACCGTAG
GACTGCGAGGAGAGTCTCGCTAACGTGTCGGCTGGTGTTGAAAGTTCACAAGAAGCTGTTCAAAATGTAGTCTATTCCTG
TTGGTTGGGTTAACAAGAAACAGTGTAGAGTATATTCTAAGAGTAACCTGTGACATTATGCTGGTACCGAAGACTACTGA
CTGGTGTACAAGGCCTTGATCTGCAAGCTGGAACAGCATGATTTGTCTAAATTCTGAAAGAAAGAAAAAACTGTAGTTGT
TTGGACTAATGGGCAATATGCTGCTGCATGGAAGAGGGCCCTGACTCCTCAATAGTGTTTAGTTTTGAGACATTACTGTG
CTTTTAATGCCCGTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37540.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis