Browse Element(s) Details


OsAffx.30572.1.S1_at

Description tigr:9638.m02415
TID=OsAffx.30572.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2845011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30572.1.S1_at--141--8631Chr10:14473856..14473880 (25 bp)
TGGTGGCAGAAAACTTGGACGAAGA
LOC_Os10g28450
OsAffx.30572.1.S1_at--211--411Chr10:14473665..14473689 (25 bp)
ATCAGTCGTTTTACGTCAGACAACA
LOC_Os10g28450
OsAffx.30572.1.S1_at--468--10331Chr10:14473656..14473680 (25 bp)
TTTACGTCAGACAACAATGGCAATG
LOC_Os10g28450
OsAffx.30572.1.S1_at--658--6411Chr10:14473489..14473513 (25 bp)
GATCAGCGGAGAGAGCTACTTCCCT
LOC_Os10g28450
OsAffx.30572.1.S1_at--633--1351Chr10:14473480..14473504 (25 bp)
AGAGAGCTACTTCCCTAGCTTGTAT
LOC_Os10g28450
OsAffx.30572.1.S1_at--429--9351Chr10:14473451..14473475 (25 bp)
TCGCATTGATCGTTGGTGGATTCCA
LOC_Os10g28450
OsAffx.30572.1.S1_at--203--10851Chr10:14473439..14473463 (25 bp)
TTGGTGGATTCCATGGCATCGGCAC
LOC_Os10g28450
OsAffx.30572.1.S1_at--749--8571Chr10:14473435..14473459 (25 bp)
TGGATTCCATGGCATCGGCACACTC
LOC_Os10g28450
OsAffx.30572.1.S1_at--988--851Chr10:14473427..14473451 (25 bp)
ATGGCATCGGCACACTCGCTACAAC
LOC_Os10g28450
OsAffx.30572.1.S1_at--564--2171Chr10:14473416..14473440 (25 bp)
ACACTCGCTACAACTGATCGCAAAG
LOC_Os10g28450
OsAffx.30572.1.S1_at--709--3251Chr10:14473406..14473430 (25 bp)
CAACTGATCGCAAAGTAGGTATTTT
LOC_Os10g28450
Target Sequence 
TGGTGGCAGAAAACTTGGACGAAGAGGCGCGACGAATCGGAGAGCTGGTTGCCAGCAACTTCAGCATCATTGGAGTAGAT
GTAAATCAGGTAGTAATCCATCCTCGATTGGGCAGGAAGGGTTATGAAATGATCATCGCGTTCATGAACCCTGAAGGAAT
GTTGGCTTACGGGCGTGCCTGGAAATTCTGCATCAGTCGTTTTACGTCAGACAACAATGGCAATGTACTGAATCTGAAAC
AGCTTGTTGAACTTATGCAATCTTGTGGAGCAACCAACAACCCTGATGTATCCTGGGTGACATTCCAGGGATCAGATGTG
ATCTACAGACTTATCAGGTCAGCCAATGGTGGTGTTATTCCTTCATTGATCAGCGGAGAGAGCTACTTCCCTAGCTTGTA
TGATGTCGCATTGATCGTTGGTGGATTCCATGGCATCGGCACACTCGCTACAACTGATCGCAAAGTAGGTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis