Browse Element(s) Details


Os.46851.1.S1_x_at

Description gb:AK107671.1
DB_XREF= gi:32992880
TID=Os.46851.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to sulfate transporter (ATST1) (OSJNBa0053G13.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H09, full insert sequence.
FL= gb:AK107671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2844011/11Sulfate transporter 3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0005886cellular_componentplasma membrane
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46851.1.S1_x_at--469--491Chr10:14469823..14469981 (25 bp)
ATCGGACTCGCCATTGCAGTTGGGA
LOC_Os10g28440
Os.46851.1.S1_x_at--1089--6491Chr10:14469980..14470004 (25 bp)
GATATCGATTCTCCGGATCCTATTG
LOC_Os10g28440
Os.46851.1.S1_x_at--584--10231Chr10:14470000..14470024 (25 bp)
TATTGTTCATCGCACGGCCGAAGAC
LOC_Os10g28440
Os.46851.1.S1_x_at--244--7611Chr10:14470035..14470059 (25 bp)
GGGAAGATGCCAAACTCGACGAACT
LOC_Os10g28440
Os.46851.1.S1_x_at--1137--7991Chr10:14470066..14470090 (25 bp)
GGATGGACCAGTACACCGTGGCGAA
LOC_Os10g28440
Os.46851.1.S1_x_at--335--10631Chr10:14470114..14470138 (25 bp)
TTCGCATCGACTCACCTATCTACTT
LOC_Os10g28440
Os.46851.1.S1_x_at--676--1151Chr10:14470348..14470500 (25 bp)
AGTCTTGGACATGGGTGCCGTTGCC
LOC_Os10g28440
Os.46851.1.S1_x_at--794--6951Chr10:14470559..14470690 (25 bp)
GTAGCATTCAGATTGCGCTGGCGAA
LOC_Os10g28440
Os.46851.1.S1_x_at--181--3011Chr10:14470723..14470747 (25 bp)
AATCAAATGTTCTCGGGCTCATCGG
LOC_Os10g28440
Os.46851.1.S1_x_at--171--6211Chr10:14470776..14470800 (25 bp)
GAGGCATGCTACTATGCGCAGCAAA
LOC_Os10g28440
Os.46851.1.S1_x_at--1093--771Chr10:14470880..14470904 (25 bp)
ATGTGCAGTACACCAGTATCTCCTG
LOC_Os10g28440
Target Sequence 
ATCGGACTCGCCATTGCAGTTGGGATATCGATTCTCCGGATCCTATTGTTCATCGCACGGCCGAAGACGACAGTCCTCGG
GAAGATGCCAAACTCGACGAACTTCAGGAGGATGGACCAGTACACCGTGGCGAAGGCCGTGCCGGGATTGCTCGTGCTTC
GCATCGACTCACCTATCTACTTCGCCAATTCAGGCTACCTGCGAGAGAGGATCATGCGGTGGATCGACCACGAGGAGGAC
CGGATCAAGGCCGAGGGTCTGGAGAGCTTGAAGTGTGTAGTCTTGGACATGGGTGCCGTTGCCAGCATCGACACGAGCGG
CACGAAGATGTTGGAAGATCTCAAGAAGAACCTAGACAGGAGTAGCATTCAGATTGCGCTGGCGAACCCGGGGAGTGAAA
TCATGAGGAAATTGGACAAATCAAATGTTCTCGGGCTCATCGGAGAGGAGTGGATCTTCCTGACAGTGAGCGAGGCATGC
TACTATGCGCAGCAAAACTGCAAGATAGGAGTAGGAATGGGTGTAGTACAATGTGTAGTAGATCCTGAACACATGGTCTG
AAACTCTGTAATAGAATGTGCAGTACACCAGTATCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46851.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis