Browse Element(s) Details


Os.28943.1.S1_x_at

Description gb:AK110862.1
DB_XREF= gi:32996071
TID=Os.28943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0067E01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D08, full insert sequence.
FL= gb:AK110862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3993011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g201605/11retrotransposon protein, putative, unclassified
LOC_Os08g194004/11retrotransposon protein, putative, unclassified
LOC_Os07g285404/11retrotransposon protein, putative, unclassified
LOC_Os04g111704/11retrotransposon protein, putative, unclassified
LOC_Os03g271504/11retrotransposon protein, putative, unclassified
LOC_Os01g278004/11retrotransposon protein, putative, unclassified
LOC_Os05g495604/11retrotransposon protein, putative, unclassified
LOC_Os03g595104/11retrotransposon protein, putative, unclassified
LOC_Os01g192004/11retrotransposon protein, putative, unclassified
LOC_Os05g014104/11retrotransposon protein, putative, unclassified
LOC_Os01g636404/11retrotransposon protein, putative, unclassified
LOC_Os03g462304/11retrotransposon protein, putative, unclassified
LOC_Os04g397204/11retrotransposon protein, putative, unclassified
LOC_Os02g174204/11retrotransposon protein, putative, unclassified
LOC_Os01g174504/11retrotransposon protein, putative, unclassified
LOC_Os05g381104/11retrotransposon protein, putative, unclassified
LOC_Os03g409604/11retrotransposon protein, putative, unclassified
LOC_Os04g327204/11retrotransposon protein, putative, unclassified
LOC_Os01g210904/11retrotransposon protein, putative, unclassified
LOC_Os05g505404/11retrotransposon protein, putative, unclassified
LOC_Os04g200544/11retrotransposon protein, putative, unclassified
LOC_Os05g305504/11retrotransposon protein, putative, unclassified
LOC_Os12g406804/11retrotransposon protein, putative, unclassified
LOC_Os05g102604/11retrotransposon protein, putative, unclassified
LOC_Os06g292004/11retrotransposon protein, putative, unclassified
LOC_Os01g559204/11retrotransposon protein, putative, unclassified
LOC_Os05g042904/11retrotransposon protein, putative, unclassified
LOC_Os05g211104/11retrotransposon protein, putative, unclassified
LOC_Os09g173804/11retrotransposon protein, putative, unclassified
LOC_Os07g316404/11retrotransposon protein, putative, unclassified
LOC_Os12g098504/11retrotransposon protein, putative, unclassified
LOC_Os04g480803/11retrotransposon protein, putative, unclassified
LOC_Os02g520703/11retrotransposon protein, putative, unclassified
LOC_Os04g127703/11retrotransposon protein, putative, unclassified
LOC_Os11g345203/11retrotransposon protein, putative, unclassified
LOC_Os09g159003/11retrotransposon protein, putative, unclassified
LOC_Os04g439703/11retrotransposon protein, putative, unclassified
LOC_Os01g631103/11retrotransposon protein, putative, unclassified
LOC_Os05g416903/11retrotransposon protein, putative, unclassified
LOC_Os09g247603/11retrotransposon protein, putative, unclassified
LOC_Os08g094903/11retrotransposon protein, putative, unclassified
LOC_Os05g408603/11retrotransposon protein, putative, unclassified
LOC_Os05g265903/11retrotransposon protein, putative, unclassified
LOC_Os01g037903/11retrotransposon protein, putative, unclassified
LOC_Os02g484103/11retrotransposon protein, putative, unclassified
LOC_Os06g238303/11retrotransposon protein, putative, unclassified
LOC_Os02g560703/11retrotransposon protein, putative, unclassified
LOC_Os03g475902/11retrotransposon protein, putative, unclassified
LOC_Os01g433102/11retrotransposon protein, putative, unclassified
LOC_Os10g364402/11retrotransposon protein, putative, unclassified
LOC_Os05g289102/11retrotransposon protein, putative, unclassified
LOC_Os01g506502/11retrotransposon protein, putative, unclassified
LOC_Os11g344202/11retrotransposon protein, putative, unclassified
LOC_Os10g168502/11retrotransposon protein, putative, unclassified
LOC_Os12g365602/11retrotransposon protein, putative, unclassified
LOC_Os11g345902/11retrotransposon protein, putative, unclassified
LOC_Os01g616502/11retrotransposon protein, putative, unclassified
LOC_Os03g139102/11retrotransposon protein, putative, unclassified
LOC_Os02g095602/11retrotransposon protein, putative, unclassified
LOC_Os04g209502/11retrotransposon protein, putative, unclassified
LOC_Os02g272402/11retrotransposon protein, putative, unclassified
LOC_Os07g366602/11retrotransposon protein, putative, unclassified
LOC_Os06g445802/11retrotransposon protein, putative, unclassified
LOC_Os09g293402/11retrotransposon protein, putative, unclassified
LOC_Os03g010702/11retrotransposon protein, putative, unclassified
LOC_Os03g366702/11retrotransposon protein, putative, unclassified
LOC_Os06g391702/11retrotransposon protein, putative, unclassified
LOC_Os01g061702/11retrotransposon protein, putative, unclassified
LOC_Os02g224202/11retrotransposon protein, putative, unclassified
LOC_Os08g358002/11retrotransposon protein, putative, unclassified
LOC_Os03g549502/11retrotransposon protein, putative, unclassified
LOC_Os01g499702/11retrotransposon protein, putative, unclassified
LOC_Os08g409802/11retrotransposon protein, putative, unclassified
LOC_Os07g437602/11retrotransposon protein, putative, unclassified
LOC_Os08g236402/11retrotransposon protein, putative, unclassified
LOC_Os01g410602/11retrotransposon protein, putative, unclassified
LOC_Os10g284602/11retrotransposon protein, putative, unclassified
LOC_Os04g275101/11retrotransposon protein, putative, unclassified
LOC_Os07g322601/11retrotransposon protein, putative, unclassified
LOC_Os08g180901/11retrotransposon protein, putative, unclassified
LOC_Os07g233101/11retrotransposon protein, putative, unclassified
LOC_Os05g339901/11retrotransposon protein, putative, unclassified
LOC_Os01g438201/11retrotransposon protein, putative, unclassified
LOC_Os11g149601/11retrotransposon protein, putative, unclassified
LOC_Os05g231901/11retrotransposon protein, putative, unclassified
LOC_Os01g269901/11retrotransposon protein, putative, unclassified
LOC_Os03g444001/11retrotransposon protein, putative, unclassified
LOC_Os03g419901/11retrotransposon protein, putative, unclassified
LOC_Os04g099401/11retrotransposon protein, putative, unclassified
LOC_Os04g318501/11retrotransposon protein, putative, unclassified
LOC_Os06g163101/11retrotransposon protein, putative, unclassified
LOC_Os03g010601/11retrotransposon protein, putative, unclassified
LOC_Os07g348001/11retrotransposon protein, putative, unclassified
LOC_Os03g062701/11retrotransposon protein, putative, unclassified
LOC_Os06g155201/11retrotransposon protein, putative, unclassified
LOC_Os09g037001/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g256101/11retrotransposon protein, putative, unclassified
LOC_Os10g089101/11retrotransposon protein, putative, unclassified
LOC_Os04g517201/11retrotransposon protein, putative, unclassified
LOC_Os08g445801/11retrotransposon protein, putative, unclassified
LOC_Os12g190101/11retrotransposon protein, putative, unclassified
LOC_Os01g546801/11retrotransposon protein, putative, unclassified
LOC_Os05g029601/11retrotransposon protein, putative, unclassified
LOC_Os03g211901/11retrotransposon protein, putative, unclassified
LOC_Os08g065801/11retrotransposon protein, putative, unclassified
LOC_Os02g301201/11retrotransposon protein, putative, unclassified
LOC_Os10g226501/11transposon protein, putative, unclassified
LOC_Os05g040301/11retrotransposon protein, putative, unclassified
LOC_Os06g429701/11retrotransposon protein, putative, unclassified
LOC_Os05g456501/11retrotransposon protein, putative, unclassified
LOC_Os03g156101/11retrotransposon protein, putative, unclassified
LOC_Os02g391201/11transposon protein, putative, unclassified
LOC_Os07g136341/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g375801/11retrotransposon protein, putative, unclassified
LOC_Os10g166701/11retrotransposon protein, putative, unclassified
LOC_Os03g385601/11retrotransposon protein, putative, unclassified
LOC_Os08g375501/11retrotransposon protein, putative, unclassified
LOC_Os04g380701/11retrotransposon protein, putative, unclassified
LOC_Os12g217201/11retrotransposon protein, putative, unclassified
LOC_Os07g318601/11retrotransposon protein, putative, unclassified
LOC_Os04g591101/11retrotransposon protein, putative, unclassified
LOC_Os07g092301/11retrotransposon protein, putative, unclassified
LOC_Os07g323201/11retrotransposon protein, putative, unclassified
LOC_Os03g050001/11retrotransposon protein, putative, unclassified
LOC_Os03g195301/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28943.1.S1_x_at--298--8412Chr06:11565330..11565354 (25 bp)
GGCCCTCCGCTTGGCGAGTGAGGTA
LOC_Os06g20160
Os.28943.1.S1_x_at--608--567107Chr12:25152105..25152129 (25 bp)
GACTTCTCCCCGTGGGCAGCGCTGG
LOC_Os12g40680
Os.28943.1.S1_x_at--896--86368Chr12:25152117..25152141 (25 bp)
TGGGCAGCGCTGGAAGAGTTCCCTC
LOC_Os12g40680
Os.28943.1.S1_x_at--744--75979Chr12:25152118..25152142 (25 bp)
GGGCAGCGCTGGAAGAGTTCCCTCC
LOC_Os12g40680
Os.28943.1.S1_x_at--1005--933107Chr12:25152232..25152256 (25 bp)
TCGCGCTCGACTCCGACGAGGAGGG
LOC_Os12g40680
Os.28943.1.S1_x_at--390--4213Chr01:37240308..37240332 (25 bp)
CCGCCAATCTTAATAACTTCTCCTT
NONE
Os.28943.1.S1_x_at--485--4392Chr01:37240310..37240334 (25 bp)
GCCAATCTTAATAACTTCTCCTTCT
NONE
Os.28943.1.S1_x_at--1124--3052Chr01:37240313..37240337 (25 bp)
AATCTTAATAACTTCTCCTTCTTCT
NONE
Os.28943.1.S1_x_at--206--432Chr01:37240314..37240338 (25 bp)
ATCTTAATAACTTCTCCTTCTTCTT
NONE
Os.28943.1.S1_x_at--674--9752Chr01:37240318..37240342 (25 bp)
TAATAACTTCTCCTTCTTCTTCCGA
NONE
Os.28943.1.S1_x_at--564--9812Chr01:37240321..37240345 (25 bp)
TAACTTCTCCTTCTTCTTCCGAGGC
NONE
Target Sequence 
GGCCCTCCGCTTGGCGAGTGAGGTAGGGCCCGGCATGCTTCGGGACGCCGTCTCCCGTCTAGACCGCGCCGGGCGGCAGG
CGGGTCTCTGGGGCGGGCGGCACGCGAAGTACGCCGCCAACCAGGGGGGCCTCGCCCAGTGCCTCTCAGAGATGGCCGGG
GCCCTCCAGCGGCTCCCCGAGGAGCTCGAGGAGACGATCAAGTCATCCTCGAGGGACCTCGCCCGGGGGGCGGTGGAGCT
CGTACTGGCAAGCTACCAGGCCAGGGACCCTGACTTCTCCCCGTGGGCAGCGCTGGAAGAGTTCCCTCCCGGAACCGAGG
ATGGCGCGCGCGCGCGGGTCCGGGACGCCGCCGACTACATCGTCCACAGCTTCGAGGGTACGGCCCCTCGGCTCGCGTTC
GCGCTCGACTCCGACGAGGAGGGCGGTGACGACGGTGCGGACGACAGCGGCGACGAGGCCGACGGCCCGGGGGCGCCGGA
GTGAGCCCCCAGGCCCCCGCCAATCTTAATAACTTCTCCTTCTTCTTCCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28943.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis