Browse Element(s) Details


Os.47130.4.A1_x_at

Description gb:NM_184811.1
DB_XREF= gi:34896711
GEN=OSJNBa0087M10.24
TID=Os.47130.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47130 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative XS domain containing protein (OSJNBa0087M10.24), mRNA.
PROD=putative XS domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g399409/11retrotransposon protein, putative, unclassified
LOC_Os01g316506/11retrotransposon protein, putative, unclassified
LOC_Os07g020705/11retrotransposon protein, putative, unclassified
LOC_Os03g399105/11XH domain containing protein, expressed
LOC_Os03g123405/11retrotransposon protein, putative, unclassified
LOC_Os01g101204/11retrotransposon protein, putative, unclassified
LOC_Os05g305404/11retrotransposon protein, putative, unclassified
LOC_Os07g386804/11retrotransposon protein, putative, unclassified
LOC_Os01g256404/11retrotransposon protein, putative, unclassified
LOC_Os11g438804/11retrotransposon protein, putative, unclassified
LOC_Os09g158904/11retrotransposon protein, putative, unclassified
LOC_Os05g375704/11retrotransposon protein, putative, unclassified
LOC_Os09g380803/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g075603/11retrotransposon protein, putative, unclassified
LOC_Os03g366003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g102203/11retrotransposon protein, putative, unclassified
LOC_Os05g042803/11retrotransposon protein, putative, unclassified
LOC_Os03g206603/11retrotransposon protein, putative, unclassified
LOC_Os07g405403/11retrotransposon protein, putative, unclassified
LOC_Os01g038803/11retrotransposon protein, putative, unclassified
LOC_Os01g174403/11retrotransposon protein, putative, unclassified
LOC_Os02g560803/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g385203/11retrotransposon protein, putative, unclassified
LOC_Os05g337503/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g135703/11retrotransposon protein, putative, unclassified
LOC_Os10g355103/11retrotransposon protein, putative, unclassified
LOC_Os02g482303/11retrotransposon protein, putative, unclassified
LOC_Os02g042803/11retrotransposon protein, putative, unclassified
LOC_Os04g340203/11retrotransposon protein, putative, unclassified
LOC_Os01g173802/11retrotransposon protein, putative, unclassified
LOC_Os01g636302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g222842/11ABC-2 type transporter family protein, expressed
LOC_Os01g126302/11retrotransposon protein, putative, unclassified
LOC_Os03g420002/11retrotransposon protein, putative, unclassified
LOC_Os12g117702/11retrotransposon protein, putative, unclassified
LOC_Os09g173702/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g198402/1133 kDa secretory protein, putative, expressed
LOC_Os01g210902/11retrotransposon protein, putative, unclassified
LOC_Os11g245802/11retrotransposon protein, putative, unclassified
LOC_Os05g490902/11retrotransposon protein, putative, unclassified
LOC_Os03g056702/11retrotransposon protein, putative, unclassified
LOC_Os01g559302/11retrotransposon protein, putative, unclassified
LOC_Os06g144802/11retrotransposon protein, putative, unclassified
LOC_Os11g344301/11retrotransposon protein, putative, unclassified
LOC_Os01g499901/11retrotransposon protein, putative, unclassified
LOC_Os11g344001/11retrotransposon protein, putative, unclassified
LOC_Os02g224301/11retrotransposon protein, putative, unclassified
LOC_Os12g117401/11retrotransposon protein, putative, unclassified
LOC_Os07g322401/11retrotransposon protein, putative, unclassified
LOC_Os08g100401/11retrotransposon protein, putative, unclassified
LOC_Os06g310801/11retrotransposon protein, putative, unclassified
LOC_Os07g322701/11retrotransposon protein, putative, unclassified
LOC_Os07g233201/11retrotransposon protein, putative, unclassified
LOC_Os06g303501/11retrotransposon protein, putative, unclassified
LOC_Os02g223901/11retrotransposon, putative, centromere-specific
LOC_Os12g203501/11retrotransposon protein, putative, unclassified
LOC_Os07g323301/11retrotransposon protein, putative, unclassified
LOC_Os07g436301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g522101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g320801/11retrotransposon protein, putative, unclassified
LOC_Os01g192101/11retrotransposon protein, putative, unclassified
LOC_Os03g139201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g468501/11retrotransposon protein, putative, unclassified
LOC_Os03g366841/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g506601/11retrotransposon protein, putative, unclassified
LOC_Os05g288901/11retrotransposon protein, putative, unclassified
LOC_Os11g328301/11retrotransposon protein, putative, unclassified
LOC_Os04g313701/11retrotransposon protein, putative, unclassified
LOC_Os03g409801/11retrotransposon protein, putative, unclassified
LOC_Os08g012501/11retrotransposon protein, putative, unclassified
LOC_Os10g364501/11retrotransposon protein, putative, unclassified
LOC_Os09g293201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010025biological_processwax biosynthesis
GO:0016301molecular_functionkinase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47130.4.A1_x_at--255--3391Chr03:22153634..22153658 (25 bp)
CAGCAGCATGCTTGCAAAGATTCAA
LOC_Os03g39940
Os.47130.4.A1_x_at--207--9771Chr03:22153536..22153560 (25 bp)
TAAGGAACTTAATTATTTGGCTACA
LOC_Os03g39940
Os.47130.4.A1_x_at--369--5951Chr03:22153361..22153385 (25 bp)
GAGAATGAGCTTCTTAATTTAGCAA
LOC_Os03g39940
Os.47130.4.A1_x_at--800--5911Chr03:22153310..22153334 (25 bp)
GAGCTTTTGCGGCTTGTTGAGAAAC
LOC_Os03g39940
Os.47130.4.A1_x_at--1114--2452Chr07:21936475..21936954 (25 bp)
AACACAAGCCGGAAATGACCTCTGA
NONE
Os.47130.4.A1_x_at--54--103345Chr09:9710878..9710902 (25 bp)
TTTCAACCTTCATTCAATGGCCAGC
LOC_Os09g15890
Os.47130.4.A1_x_at--883--29515Chr08:5498173..5498197 (25 bp)
AATGGCCAGCGACTTTCTTGCCATG
NONE
Os.47130.4.A1_x_at--177--44323Chr10:7115297..7115321 (25 bp)
GCCATGCTTGCGCTGAAGCCTGGAA
LOC_Os10g13570
Os.47130.4.A1_x_at--43--449114Chr12:25159453..25159477 (25 bp)
GCCTGGAATGGATCTGACCGGGACT
NONE
Os.47130.4.A1_x_at--429--763146Chr12:6380118..6380142 (25 bp)
GGGACTGACATACCAACTCCAGGAG
LOC_Os12g11770
Os.47130.4.A1_x_at--873--481239Chr12:6369808..6369832 (25 bp)
GCTCTCATCATTCCGACGGGACGGG
LOC_Os12g11740
Target Sequence 
CAGCAGCATGCTTGCAAAGATTCAAAGAGAATAATTGATGAAAACCTAAANCTGTATGAAGAACTNCAGGCTAAGAAACA
TGAAATTGACCGGAGNTGTAAGGAACTTAATTATTTGGCTACAAATACTAATATTGACAGAGGAAAACTCGTAGCAGAGA
AAGAAAAGAATGCAAAGGAGAATGAGCTTCTTAATTTAGCAAATCTAAAGCAGAAGGAGGCAGATGAAGAGCTTTTGCGG
CTTGTTGAGAAACACAAGCCGGAAATGACCTCTGACAAGCAGTACACACACCTCCTGCTCCGCTCGTCAGCTCTCCCGGT
GGACGCCCGTTTCAACCTTCATTCAATGGCCAGCGACTTTCTTGCCATGCTTGCGCTGAAGCCTGGAATGGATCTGACCG
GGACTGACATACCAACTCCAGGAGTCAGCACGCCAGCTCCGGCTAGAGACGAGAGCCAGGAAGCTCTCATCATTCCGACG
GGACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47130.4.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis