Browse Element(s) Details


Os.28943.1.S1_at

Description gb:AK110862.1
DB_XREF= gi:32996071
TID=Os.28943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0067E01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D08, full insert sequence.
FL= gb:AK110862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g399309/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28943.1.S1_at--181--4213Chr06:13925833..13925854 (22 bp)
GCCCCCGCCAATCTTAATAACTTCT
NONE
Os.28943.1.S1_at--246--42116Chr09:14752675..14752694 (20 bp)
CCCGCCAATCTTAATAACTTCTCCT
NONE
Os.28943.1.S1_at--389--4213Chr01:37240308..37240332 (25 bp)
CCGCCAATCTTAATAACTTCTCCTT
NONE
Os.28943.1.S1_at--112--4172Chr01:37240309..37240333 (25 bp)
CGCCAATCTTAATAACTTCTCCTTC
NONE
Os.28943.1.S1_at--486--4392Chr01:37240310..37240334 (25 bp)
GCCAATCTTAATAACTTCTCCTTCT
NONE
Os.28943.1.S1_at--484--4392Chr01:37240311..37240335 (25 bp)
CCAATCTTAATAACTTCTCCTTCTT
NONE
Os.28943.1.S1_at--882--3172Chr01:37240312..37240336 (25 bp)
CAATCTTAATAACTTCTCCTTCTTC
NONE
Os.28943.1.S1_at--1123--3052Chr01:37240313..37240337 (25 bp)
AATCTTAATAACTTCTCCTTCTTCT
NONE
Os.28943.1.S1_at--207--432Chr01:37240314..37240338 (25 bp)
ATCTTAATAACTTCTCCTTCTTCTT
NONE
Target Sequence 
GCCCCCGCCAATCTTAATAACTTCTCCTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis