Browse Element(s) Details


Os.56311.1.S1_at

Description gb:AK109832.1
DB_XREF= gi:32995041
TID=Os.56311.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C08, full insert sequence.
FL= gb:AK109832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3988011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39850OsAffx.13256.1.S1_at11/113+22114876..22116121Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56311.1.S1_at--703--2811Chr03:22128976..22129000 (25 bp)
AAGATTTCTTTCTCACGCTCACTAA
LOC_Os03g39880
Os.56311.1.S1_at--519--8011Chr03:22129013..22129037 (25 bp)
GGAGGCCATCCTGCAAGAACCAAGA
LOC_Os03g39880
Os.56311.1.S1_at--1013--1411Chr03:22129047..22129071 (25 bp)
AGAAATGGCCGTGTGTATCGCTTCC
LOC_Os03g39880
Os.56311.1.S1_at--33--7311Chr03:22129093..22129117 (25 bp)
GTGCTGAATGCGTCGACGTTCGCTT
LOC_Os03g39880
Os.56311.1.S1_at--355--1891Chr03:22129108..22129132 (25 bp)
ACGTTCGCTTCAGGGTCAGAGTATA
LOC_Os03g39880
Os.56311.1.S1_at--201--5312Chr10:9602696..9602769 (24 bp)
GAAGGAATCCCTATGCATGCAAGAA
NONE
Os.56311.1.S1_at--720--1371Chr03:22129195..22129219 (25 bp)
AGAGCTCCATCCACTACATTGAAGA
LOC_Os03g39880
Os.56311.1.S1_at--1088--9531Chr03:22129284..22129308 (25 bp)
TCTATCCCACGAGCAACAAGGTTGA
LOC_Os03g39880
Os.56311.1.S1_at--758--2311Chr03:22129397..22129421 (25 bp)
AAAGGTCTCACCTATCCTGTTCTTA
LOC_Os03g39880
Os.56311.1.S1_at--132--231Chr03:22129425..22129449 (25 bp)
ATATTGACACTTTGCAAGACCTGGT
LOC_Os03g39880
Os.56311.1.S1_at--464--4771Chr03:22129464..22129488 (25 bp)
GCTGCTTCCAGTGGCGTTATGGAGT
LOC_Os03g39880
Target Sequence 
AAGATTTCTTTCTCACGCTCACTAATCATAGTGATCGGGAGGCCATCCTGCAAGAACCAAGACTGATGCTGAGAAATGGC
CGTGTGTATCGCTTCCGTCCATGGGACGAGAGGCGCGGTGCTGAATGCGTCGACGTTCGCTTCAGGGTCAGAGTATATGT
GGAAGGAATCCCTATGCATGCAAGAACAGATGCAACTGCGGCAAAGATCATCGGCAAGAAGAGCTCCATCCACTACATTG
AAGAATACTCAAGGCGTCGAAACTACAACCGCACTTTTGACTATTGGGTATGGAGCTCAGACCCGAGCTCTATCCCACGA
GCAACAAGGTTGACAATCACGTCAGCAGACGAGGAGGGGCTCCCAGTTGACACTCCCTTCCCGGAGCTGGAAGCTGTGCA
TCCTGCCCCTTCTGACACAAAAAAGGTCTCACCTATCCTGTTCTTATTCATATTGACACTTTGCAAGACCTGGTGTCCCG
ACAGGTCCGCTGCTTCCAGTGGCGTTATGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis