Browse Element(s) Details


Os.41695.15.S1_s_at

Description gb:NM_197386.1
DB_XREF= gi:37536131
TID=Os.41695.15
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.20 (P0503E05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1997011/11Transposable element protein, putative, MuDR
LOC_Os06g0807011/11transposon protein, putative, Mutator sub-class
LOC_Os10g3756011/11expressed protein
LOC_Os08g2700011/11Zinc knuckle family protein
LOC_Os07g4143011/11transposon protein, putative, Mutator sub-class
LOC_Os04g1252011/11transposon protein, putative, Mutator sub-class
LOC_Os12g2953011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g2874011/11transposon protein, putative, Mutator sub-class
LOC_Os10g2636011/11transposon protein, putative, Mutator sub-class
LOC_Os11g3183011/11Transposable element protein, putative, MuDR
LOC_Os08g2899011/11transposon protein, putative, Mutator sub-class
LOC_Os04g0778411/11transposon protein, putative, Mutator sub-class
LOC_Os05g2547011/11transposon protein, putative, Mutator sub-class
LOC_Os07g4602011/11transposon protein, putative, Mutator sub-class
LOC_Os03g4713011/11transposon protein, putative, Mutator sub-class
LOC_Os10g0724811/11transposon protein, putative, Mutator sub-class
LOC_Os05g3606011/11transposon protein, putative, Mutator sub-class
LOC_Os06g2905011/11transposon protein, putative, Mutator sub-class
LOC_Os05g0792011/11transposon protein, putative, Mutator sub-class
LOC_Os01g1847011/11transposon protein, putative, Mutator sub-class
LOC_Os11g1459011/11hypothetical protein
LOC_Os07g2316911/11expressed protein
LOC_Os05g0509011/11Transposable element protein, putative, MuDR
LOC_Os06g3889011/11hypothetical protein
LOC_Os04g234709/11transposon protein, putative, Mutator sub-class
LOC_Os03g023709/11calcineurin-like phosphoesterase family protein, putative
LOC_Os01g297509/11SWIM zinc finger family protein
LOC_Os10g177109/11calcineurin-like phosphoesterase family protein, putative
LOC_Os03g246308/11hypothetical protein
LOC_Os06g189707/11hypothetical protein
LOC_Os02g474807/11hypothetical protein
LOC_Os01g508007/11hypothetical protein
LOC_Os07g104706/11Zinc knuckle family protein
LOC_Os03g180605/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g398402/11transposon protein, putative, Mutator sub-class
LOC_Os07g470102/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19900OsAffx.5879.1.S1_at7/118+11916805..11917791NA
LOC_Os08g19910NANA8+11920580..11921389hypothetical protein
LOC_Os08g19920NANA8+11922819..11926696retrotransposon protein, putative, unclassified
LOC_Os08g19930OsAffx.22240.1.S1_x_at1/118+11928916..11932541retrotransposon protein, putative, unclassified
LOC_Os08g19940NANA8+11933675..11935134hypothetical protein
LOC_Os08g19950NANA8+11935417..11936577hypothetical protein
LOC_Os08g19960OsAffx.5880.1.S1_at11/118+11939868..11940164hypothetical protein
LOC_Os08g19970Os.41695.15.S1_s_at11/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.5.S1_x_at4/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.3.S1_x_at3/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.4.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.2.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19980Os.21561.1.S1_at11/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19980OsAffx.12953.1.S1_at3/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19990NANA8+11963107..11966134transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g20000Os.50464.1.S1_at11/118+11968350..11975567NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41695.15.S1_s_at--147--60936Chr11:8214238..8214262 (25 bp)
GAGTACCTTCGTTGGCTGCATAGGA
LOC_Os11g14590
Os.41695.15.S1_s_at--231--11936Chr11:8214239..8214263 (25 bp)
AGTACCTTCGTTGGCTGCATAGGAC
LOC_Os11g14590
Os.41695.15.S1_s_at--984--99731Chr11:8214241..8214265 (25 bp)
TACCTTCGTTGGCTGCATAGGACAT
LOC_Os11g14590
Os.41695.15.S1_s_at--1152--17331Chr11:8214242..8214266 (25 bp)
ACCTTCGTTGGCTGCATAGGACATA
LOC_Os11g14590
Os.41695.15.S1_s_at--933--43133Chr11:8214243..8214267 (25 bp)
CCTTCGTTGGCTGCATAGGACATAT
LOC_Os11g14590
Os.41695.15.S1_s_at--783--36335Chr11:8214244..8214268 (25 bp)
CTTCGTTGGCTGCATAGGACATATA
LOC_Os11g14590
Os.41695.15.S1_s_at--353--93934Chr11:8214246..8214270 (25 bp)
TCGTTGGCTGCATAGGACATATAGA
LOC_Os11g14590
Os.41695.15.S1_s_at--363--66131Chr11:8214248..8214272 (25 bp)
GTTGGCTGCATAGGACATATAGACT
LOC_Os11g14590
Os.41695.15.S1_s_at--235--108732Chr11:8214249..8214273 (25 bp)
TTGGCTGCATAGGACATATAGACTG
LOC_Os11g14590
Os.41695.15.S1_s_at--695--83329Chr11:8214251..8214275 (25 bp)
GGCTGCATAGGACATATAGACTGTT
LOC_Os11g14590
Os.41695.15.S1_s_at--131--90530Chr11:8214254..8214278 (25 bp)
TGCATAGGACATATAGACTGTTCCT
LOC_Os11g14590
Target Sequence 
GAGTACCTTCGTTGGCTGCATAGGACATATAGACTGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41695.15.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis