Browse Element(s) Details


OsAffx.12953.1.S1_at

Description tigr:9631.m02049
TID=OsAffx.12953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY086874 protein kinase C inhibitor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2063011/1114 kDa zinc-binding protein, putative, expressed
LOC_Os08g199803/11NB-ARC domain containing protein, expressed
LOC_Os04g143041/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0000166molecular_functionnucleotide binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005080molecular_functionprotein kinase C binding
GO:0008270molecular_functionzinc ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12953.1.S1_at--963--5751Chr03:11652775..11653113 (25 bp)
GACGATGAGAAGTATTCTTTCACCA
LOC_Os03g20630
OsAffx.12953.1.S1_at--408--6311Chr03:11652778..11653116 (25 bp)
GATGAGAAGTATTCTTTCACCAAAG
LOC_Os03g20630
OsAffx.12953.1.S1_at--197--1696Chr07:29404133..29404568 (25 bp)
ACCAAAGTGCCATCCTCTTCCTTAA
NONE
OsAffx.12953.1.S1_at--963--2318Chr07:29404552..29404571 (20 bp)
AAAGTGCCATCCTCTTCCTTAAGCA
NONE
OsAffx.12953.1.S1_at--960--9198Chr09:6217857..6217877 (21 bp)
TGCCATCCTCTTCCTTAAGCAACAA
NONE
OsAffx.12953.1.S1_at--511--4332Chr03:11653119..11653143 (25 bp)
CCATCCTCTTCCTTAAGCAACAAGG
LOC_Os03g20630
OsAffx.12953.1.S1_at--138--572Chr03:11653121..11653145 (25 bp)
ATCCTCTTCCTTAAGCAACAAGGAC
LOC_Os03g20630
OsAffx.12953.1.S1_at--338--5153Chr06:23695925..23695945 (21 bp)
GCAACAAGGACCAAAGTCTTGCCCA
NONE
OsAffx.12953.1.S1_at--1125--2431Chr03:11653137..11653161 (25 bp)
AACAAGGACCAAAGTCTTGCCCAAT
LOC_Os03g20630
OsAffx.12953.1.S1_at--1149--2913Chr06:23695926..23695947 (22 bp)
AAGGACCAAAGTCTTGCCCAATATG
NONE
OsAffx.12953.1.S1_at--843--8093Chr06:23695928..23695947 (20 bp)
GGACCAAAGTCTTGCCCAATATGTC
NONE
Target Sequence 
GACGATGAGAAGTATTCTTTCACCAAAGTGCCATCCTCTTCCTTAAGCAACAAGGACCAAAGTCTTGCCCAATATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis