Browse Element(s) Details


Os.33131.1.A1_at

Description gb:AK101653.1
DB_XREF= gi:32986862
TID=Os.33131.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057D07, full insert sequence.
FL= gb:AK101653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2055011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33131.1.A1_at--269--291Chr03:11630415..11630439 (25 bp)
ATAGTGATCCACCATTGTACTCAGT
LOC_Os03g20550
Os.33131.1.A1_at--671--8751Chr03:11630430..11630454 (25 bp)
TGTACTCAGTCACCTACTACAATGA
LOC_Os03g20550
Os.33131.1.A1_at--955--3491Chr03:11630460..11630484 (25 bp)
CATGTAATAGTGCTTTTCTTCCTCT
LOC_Os03g20550
Os.33131.1.A1_at--961--1151Chr03:11630527..11630551 (25 bp)
AGTCTCCATCTGCTTTGAATCATCT
LOC_Os03g20550
Os.33131.1.A1_at--340--1431Chr03:11630622..11630646 (25 bp)
AGAACAAGAATCAGCCTCTTCCACG
LOC_Os03g20550
Os.33131.1.A1_at--947--1931Chr03:11630644..11630668 (25 bp)
ACGGCATTCGGAAGCCTATTCTTGG
LOC_Os03g20550
Os.33131.1.A1_at--494--1431Chr03:11630683..11630707 (25 bp)
AGAACAAAAGCCGTCCTGCACTGAG
LOC_Os03g20550
Os.33131.1.A1_at--644--9031Chr03:11630699..11630723 (25 bp)
TGCACTGAGCTCCAATCTTGCAGCA
LOC_Os03g20550
Os.33131.1.A1_at--567--3071Chr03:11630712..11630736 (25 bp)
AATCTTGCAGCACCGAATGTCAGGA
LOC_Os03g20550
Os.33131.1.A1_at--422--7971Chr03:11630734..11630758 (25 bp)
GGATGCATTTTCAGCTGGTACGATT
LOC_Os03g20550
Os.33131.1.A1_at--832--1691Chr03:11630951..11630975 (25 bp)
ACCAGTGCTAATTTACATTCCAGAG
LOC_Os03g20550
Target Sequence 
ATAGTGATCCACCATTGTACTCAGTCACCTACTACAATGAGCATACATGTAATAGTGCTTTTCTTCCTCTTAGCCCCTCA
GAGTTCCAGCTGCAGACTGCATCTGGGAAGGCAGTCTCCATCTGCTTTGAATCATCTGGGGCTCAAGAACCAATGACCAA
TGCCAGCTCACCTTCTTCAAGCGCAGCACGGCGTAGCACACCTTCAGAGAACAAGAATCAGCCTCTTCCACGGCATTCGG
AAGCCTATTCTTGGGGGGTTGGTGTTGTAGAACAAAAGCCGTCCTGCACTGAGCTCCAATCTTGCAGCACCGAATGTCAG
GATGCATTTTCAGCTGGTACGATTCCTGAAGAGACAGTAGATGCAGGAAGATTTGGTTCTATCAGATTCTTCCATTTTTT
GTAAATGAATTAATGGAAGACAGTTTATTTTATTTCAAAGAGCTAATATGATACACATGTTTTTTCCTCTACACCCTCAA
AGAGTATGAGAGGTTTTCCTTGCATGTCACCATGAATTTCTTAGTTGAATTGAAATACCAGTGCTAATTTACATTCCAGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33131.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis